Hg_chrom2_TN10mRNA_2416
Organism: Heterodera glycines Gene Locus: chr2:583041-587178 Feature type: polypeptideProtein Sequence
Length: 527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 1.191 | 0.725 | 0.654 | 1.202 | 2.043 | 0.587 | 2.277 | 0.886 | 1.359 | 0.834 | 1.786 | 0.949 | 0.657 | 1.046 | 1.654 | 0.902 | 0.633 | 0.438 | 0.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2313
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.897
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PAPKRLR,RYRKRKV,KKFSSDVSDFLVLEVLKRK
|
12-72
|
0.664
|
98-119
|
0.890
|
— | — |
0.000
|
— | — |
0.775
|
0.088
|
0.002
|
0.172
|
0.015
|
0.017
|
0.024
|
0.053
|
0.079
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006561
|
1.000
|
1.000
|
Hsc_gene_26080.t1
|
Hsc_gene_26080.t1
|
— | — |
KAH7716171.1 hypothetical protein AAVH_16431 [Aphelenchus avenae]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
282-527
|
1.000
|
1-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
58843.120
|
7.223
|
9.000
|
26.376
|
9.488
|
56.546
|
43.454
|
15.180
|
11.195
|
47.628
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
86.687
|
47.499
|
32.185
|
166.575
|
143.141
|
151.551
|
175.429
|
53.134
|
2.056
|
89.146
|
51.822
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.790
|
1.674
|
2.481
|
— | — | — |
-1.627
|
1.870
|
-5.447
|
6.439
|
— | — | — |
No JSON data available for plots.