Hg_chrom2_TN10mRNA_2417
Organism: Heterodera glycines Gene Locus: chr2:587580-591733 Feature type: polypeptideProtein Sequence
Length: 276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.264 | 0.843 | 1.12 | 0.625 | 1.57 | 1.579 | 0.69 | 1.268 | 1.369 | 1.175 | 0.988 | 1.066 | 1.107 | 0.906 | 0.887 | 1.035 | 0.297 | 0.769 | 0.279 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2314
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.329
|
0.017
|
0.723
|
0.298
|
0.125
|
0.285
|
0.013
|
0.034
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006562
|
1.000
|
1.000
|
Hsc_gene_26081.t1
|
Hsc_gene_26081.t1
|
— |
Q9XWF4.1 Protein IMPACT homolog [Caenorhabditis elegans]
|
KAF7623381.1 RWD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.817|GO:0005575_0.754|GO:0003674_0.742|GO:0110165_0.742|GO:0005622_0.700|GO:0065007_0.679|GO:0005488_0.678|GO:0050789_0.673|GO:0005515_0.651|GO:0023052_0.597|GO:0005737_0.570|GO:0009987_0.568|GO:0008152_0.508
|
IPR001498+142-264+|IPR006575+8-98_11-103+|IPR016135+2-115_6-106+|IPR020568+135-269+|IPR023582+12-274+|IPR036956+134-267+
|
SM00591+11-103+
|
PF01205+142-264+Uncharacterized_protein_family_UPF0029|PF05773+8-98+RWD_domain
|
— |
PTHR16301+12-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
30656.570
|
4.812
|
-9.500
|
28.986
|
9.783
|
47.826
|
52.174
|
13.406
|
15.580
|
47.101
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
332.853
|
267.734
|
335.047
|
298.006
|
313.151
|
308.721
|
405.260
|
319.380
|
479.831
|
253.621
|
350.568
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.403
|
— |
0.486
|
— | — | — | — | — |
No JSON data available for plots.