Hg_chrom2_TN10mRNA_2421
Organism: Heterodera glycines Gene Locus: chr2:597035-601145 Feature type: polypeptideProtein Sequence
Length: 410
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.106 | 2.326 | 0.621 | 0.252 | 1.016 | 2.502 | 0.871 | 1.341 | 0.379 | 1.351 | 0.665 | 1.435 | 0.271 | 1.173 | 1.095 | 1.15 | 0.8 | 0.813 | 0.188 | 0.287 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2317
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.708
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKK,RRRR,NREAAKECRRKK,RKRQVRLLKNREAAKECRR,KRQVRLLKNREAAKECRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.863
|
0.102
|
0.013
|
0.345
|
0.072
|
0.048
|
0.067
|
0.008
|
0.117
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003178
|
1.000
|
2.000
|
Hsc_gene_26084.t1;Hsc_gene_26084.t2
|
Hsc_gene_26084.t1;Hsc_gene_26084.t2
|
— |
Q9VWW0.1 Cyclic AMP response element-binding protein B [Drosophila melanogaster]
|
KAI1708780.1 bZIP transcription factor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0005515|GO:0005634|GO:0006355
|
GO:0008150_0.955|GO:0005575_0.932|GO:0110165_0.931|GO:0065007_0.924|GO:0050789_0.922|GO:0009987_0.919|GO:0050794_0.919|GO:0005622_0.897|GO:0003674_0.821|GO:0005488_0.821|GO:0008152_0.800|GO:0044237_0.800|GO:0044238_0.800|GO:0019222_0.799|GO:0031323_0.799|GO:0009058_0.795|GO:0009059_0.795|GO:0010467_0.795|GO:0043170_0.795|GO:0044249_0.795|GO:0080090_0.790|GO:0060255_0.780|GO:0006139_0.775|GO:0016070_0.775|GO:0032774_0.775|GO:0034654_0.775|GO:0090304_0.775|GO:0141187_0.775|GO:0009889_0.774|GO:0010556_0.774|GO:0031326_0.774|GO:0010468_0.772|GO:0019219_0.760|GO:0051252_0.756|GO:0006351_0.752|GO:0043226_0.752|GO:0006355_0.744|GO:2001141_0.744|GO:0016020_0.743|GO:0043229_0.740|GO:0050896_0.736|GO:0006366_0.719|GO:0006357_0.712|GO:0043227_0.698|GO:0003676_0.687|GO:0097159_0.687|GO:0043231_0.680|GO:0005634_0.664|GO:0048518_0.629|GO:0048522_0.629|GO:0003677_0.623|GO:0009893_0.595|GO:0031325_0.590|GO:0051716_0.590|GO:0009891_0.585|GO:0010604_0.585|GO:0031328_0.582|GO:0010557_0.571|GO:0045935_0.569|GO:0051254_0.569|GO:0007154_0.565|GO:0023052_0.564|GO:0045893_0.554|GO:1902680_0.554|GO:0043565_0.549|GO:0045944_0.523
|
IPR001630+4-206+|IPR003102+22-81_39-72+|IPR004827+346-410_348-399_348-401_354-368+|IPR046347+350-401+
|
SM00338+346-410+
|
PF00170+348-401+bZIP_transcription_factor|PF02173+39-72+pKID_domain
|
G3DSA:1.20.5.170:FF:000003+350-404+cAMP-responsive_element_modulator_isoform_X2
|
PTHR45879+4-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-366
|
1.000
|
367-410
|
5zko_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
44381.200
|
7.923
|
6.500
|
21.951
|
4.878
|
54.634
|
45.366
|
12.439
|
9.512
|
55.366
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1110.122
|
488.898
|
728.081
|
521.412
|
531.990
|
529.655
|
490.113
|
551.978
|
1244.145
|
2482.876
|
1951.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.346
|
— |
-0.373
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.