SCN Proteipedia

Hg_chrom2_TN10mRNA_2422

Organism: Heterodera glycines Gene Locus: chr2:604983-610174 Feature type: polypeptide

Protein Sequence

Length: 524

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.287	1.465	0.59	0.329	0.604	2.936	0.772	2.672	1.06	1.083	0.636	1.235	0.742	1.028	0.779	1.309	1.095	0.578	0.0	0.281	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2318	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KLERKRARNRL,RKRARNRLAASKCRQRKL,KRARNRLAASKCRQRKLQR	—	—	—	—	—	—	0.000	—	—	0.852	0.104	0.008	0.361	0.071	0.031	0.049	0.002	0.076	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001767	2.000	2.000	Hsc_gene_26085.t1;Hsc_gene_26085.t2	Hsc_gene_26085.t1	—	G5ECU7.1 Transcription factor jun-1 [Caenorhabditis elegans]	KAI1728007.1 jun-like transcription factor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003677\|GO:0003700\|GO:0006355	GO:0008150_0.959\|GO:0005575_0.903\|GO:0110165_0.903\|GO:0009987_0.864\|GO:0065007_0.855\|GO:0050789_0.847\|GO:0005622_0.845\|GO:0050794_0.838\|GO:0003674_0.827\|GO:0043226_0.823\|GO:0005488_0.820\|GO:0043229_0.807\|GO:0008152_0.781\|GO:0019222_0.781\|GO:0031323_0.781\|GO:0044237_0.781\|GO:0044238_0.778\|GO:0080090_0.778\|GO:0043170_0.770\|GO:0060255_0.768\|GO:0009058_0.767\|GO:0009059_0.767\|GO:0010467_0.767\|GO:0044249_0.767\|GO:0009889_0.761\|GO:0031326_0.761\|GO:0006139_0.759\|GO:0003676_0.757\|GO:0097159_0.757\|GO:0034654_0.755\|GO:0090304_0.755\|GO:0141187_0.755\|GO:0016070_0.754\|GO:0010556_0.753\|GO:0032774_0.752\|GO:0010468_0.751\|GO:0048518_0.714\|GO:0016020_0.710\|GO:0048522_0.706\|GO:0003677_0.698\|GO:0043565_0.694\|GO:0019219_0.683\|GO:0051252_0.683\|GO:0009893_0.682\|GO:0009891_0.671\|GO:0031325_0.670\|GO:0006351_0.669\|GO:0010604_0.669\|GO:0006355_0.667\|GO:2001141_0.667\|GO:0031328_0.663\|GO:0010557_0.653\|GO:0003690_0.634\|GO:0050896_0.634\|GO:1990837_0.634\|GO:0043227_0.633\|GO:0005634_0.611\|GO:0043231_0.611\|GO:0045935_0.591\|GO:0051254_0.591\|GO:0006366_0.584\|GO:0032501_0.582\|GO:0045893_0.574\|GO:1902680_0.574\|GO:0001067_0.567\|GO:0000976_0.566\|GO:0051716_0.545\|GO:0006357_0.535\|GO:0042221_0.518\|GO:0045944_0.501	IPR002112+432-452_454-470+\|IPR004827+443-507_445-508_447-503_450-465+\|IPR046347+450-505+\|IPR050946+57-512+	SM00338+443-507+	PF00170+447-503+bZIP_transcription_factor	—	PTHR11462+57-512+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-273;372-524	1.000	274-371	7ucd_J	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.883	56564.050	9.151	20.000	20.229	8.969	53.817	46.183	13.359	6.870	53.053

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	turquoise	768.634	622.483	816.907	588.325	510.827	1300.241	833.902	608.364	294.322	1161.639	789.932

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.163	-0.219	-0.365	-0.236	1.362	-0.630	-1.197	0.596	—	—	—	—	—

No JSON data available for plots.

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