Hg_chrom2_TN10mRNA_2423
Organism: Heterodera glycines Gene Locus: chr2:604983-610636 Feature type: polypeptideProtein Sequence
Length: 438
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.088 | 1.54 | 0.664 | 0.315 | 0.685 | 3.278 | 0.734 | 1.37 | 1.065 | 1.08 | 0.588 | 1.074 | 0.888 | 1.185 | 0.792 | 1.402 | 1.198 | 0.588 | 0.0 | 0.269 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2318
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LERKRARNRL,RKRARNRLAASKCRQRKL,KRARNRLAASKCRQRKLQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.860
|
0.092
|
0.006
|
0.364
|
0.069
|
0.032
|
0.047
|
0.002
|
0.064
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001767
|
2.000
|
2.000
|
Hsc_gene_26085.t1;Hsc_gene_26085.t2
|
Hsc_gene_26085.t2
|
— |
G5ECU7.1 Transcription factor jun-1 [Caenorhabditis elegans]
|
KHN84503.1 Transcription factor AP-1 [Toxocara canis]
|
No
|
-0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.956|GO:0005575_0.931|GO:0110165_0.930|GO:0005622_0.878|GO:0009987_0.872|GO:0065007_0.870|GO:0050789_0.864|GO:0050794_0.857|GO:0043226_0.854|GO:0043229_0.835|GO:0003674_0.820|GO:0005488_0.820|GO:0008152_0.786|GO:0019222_0.786|GO:0031323_0.783|GO:0044237_0.783|GO:0044238_0.776|GO:0080090_0.776|GO:0043170_0.772|GO:0060255_0.772|GO:0009058_0.765|GO:0009059_0.765|GO:0010467_0.765|GO:0044249_0.765|GO:0009889_0.763|GO:0031326_0.763|GO:0010556_0.756|GO:0006139_0.752|GO:0034654_0.752|GO:0090304_0.752|GO:0141187_0.752|GO:0010468_0.750|GO:0016070_0.749|GO:0032774_0.749|GO:0016020_0.744|GO:0003676_0.737|GO:0097159_0.737|GO:0048518_0.732|GO:0048522_0.723|GO:0009893_0.693|GO:0003677_0.691|GO:0043565_0.687|GO:0019219_0.686|GO:0051252_0.686|GO:0009891_0.685|GO:0010604_0.685|GO:0031325_0.685|GO:0006351_0.677|GO:0031328_0.676|GO:0006355_0.671|GO:2001141_0.671|GO:0010557_0.667|GO:0043227_0.664|GO:0050896_0.651|GO:0043231_0.631|GO:0003690_0.627|GO:1990837_0.627|GO:0005634_0.621|GO:0045935_0.599|GO:0051254_0.599|GO:0006366_0.589|GO:0045893_0.583|GO:1902680_0.583|GO:0032501_0.578|GO:0000976_0.570|GO:0001067_0.570|GO:0051716_0.569|GO:0006357_0.538|GO:0042221_0.526|GO:0045944_0.508|GO:0005515_0.507
|
IPR002112+346-366_368-384+|IPR004827+357-421_359-422_361-417_364-379+|IPR046347+364-419+|IPR050946+57-427+
|
SM00338+357-421+
|
PF00170+361-417+bZIP_transcription_factor
|
— |
PTHR11462+57-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-276;320-438
|
1.000
|
277-319
|
7ucd_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
47401.640
|
7.561
|
6.000
|
18.265
|
6.849
|
54.795
|
45.205
|
10.502
|
7.763
|
53.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
768.634
|
622.483
|
816.907
|
588.325
|
510.827
|
1300.241
|
833.902
|
608.364
|
294.322
|
1161.639
|
789.932
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.163
|
-0.219
|
-0.365
|
-0.236
|
1.362
|
-0.630
|
-1.197
|
0.596
|
— | — | — | — | — |
No JSON data available for plots.