Hg_chrom2_TN10mRNA_2427
Organism: Heterodera glycines Gene Locus: chr2:619388-627343 Feature type: polypeptideProtein Sequence
Length: 857
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 1.438 | 0.976 | 1.086 | 0.836 | 0.898 | 0.847 | 0.992 | 1.297 | 0.962 | 0.725 | 1.716 | 1.621 | 0.875 | 1.5 | 1.284 | 1.109 | 0.672 | 0.898 | 0.515 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2321
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRKQKLATSVDGGMAKNRR,RKQKLATSVDGGMAKNRRR
|
49-70
|
1.000
|
1-71
|
0.992
|
— | — |
0.000
|
— | — |
0.064
|
0.047
|
0.028
|
0.187
|
0.187
|
0.192
|
0.424
|
0.039
|
0.439
|
0.864
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006565
|
1.000
|
1.000
|
Hsc_gene_26089.t1
|
Hsc_gene_26089.t1
|
— |
Q23490.1 Peroxidase mlt-7 [Caenorhabditis elegans]
|
KAI1711591.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.885|GO:0009987_0.825|GO:0005575_0.766|GO:0110165_0.766|GO:0003674_0.707|GO:0050896_0.640|GO:0051716_0.562|GO:0003824_0.554|GO:0042221_0.515
|
IPR003582+191-226_191-227_192-226_231-267_232-266+|IPR010255+326-852+|IPR019791+319-854_332-827_356-367_401-416_520-538_538-558_563-589_616-626_732-752_803-817+|IPR037120+310-854+|IPR050702+178-852+
|
SM00254+191-227_231-267+
|
PF01549+191-226_232-266+ShK_domain-like|PF03098+332-827+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000007+312-853+Peroxidase_mlt-7
|
PTHR11475+178-852+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-183
|
1.000
|
184-857
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
95846.740
|
8.511
|
23.500
|
24.504
|
10.735
|
49.942
|
50.058
|
14.119
|
10.385
|
52.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkorange
|
901.373
|
347.855
|
309.551
|
233.988
|
367.604
|
2965.950
|
273.173
|
3062.053
|
368.738
|
831.890
|
633.396
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.398
|
-0.709
|
-0.294
|
0.620
|
3.026
|
-3.429
|
— |
-3.340
|
— | — | — | — | — |
No JSON data available for plots.