SCN Proteipedia

Hg_chrom2_TN10mRNA_2429

Organism: Heterodera glycines Gene Locus: chr2:636258-645033 Feature type: polypeptide

Protein Sequence

Length: 598

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.739	1.244	1.034	1.269	0.753	2.015	0.796	1.171	1.263	0.972	0.912	1.672	0.79	1.093	0.717	1.242	0.74	0.887	0.772	1.082	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2323	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.666

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KRELKSLLKKLRKQKC	—	—	—	—	—	—	0.000	—	—	0.812	0.096	0.003	0.502	0.069	0.120	0.145	0.010	0.156	0.009

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003179	1.000	2.000	Hsc_gene_26091.t1;Hsc_gene_26091.t2	Hsc_gene_26091.t1;Hsc_gene_26091.t2;Hsc_gene_26092.t1	—	P84022.1 Mothers against decapentaplegic homolog 3 [Homo sapiens]	KAI1724778.1 MH2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005667\|GO:0006355	GO:0008150_0.907\|GO:0009987_0.830\|GO:0065007_0.828\|GO:0005575_0.821\|GO:0110165_0.821\|GO:0050789_0.817\|GO:0050794_0.806\|GO:0032501_0.750\|GO:0032502_0.736\|GO:0005622_0.733\|GO:0048856_0.720\|GO:0050896_0.699\|GO:0016020_0.695\|GO:0048518_0.658\|GO:0043226_0.657\|GO:0007275_0.652\|GO:0048522_0.650\|GO:0003674_0.643\|GO:0008152_0.638\|GO:0043170_0.637\|GO:0019222_0.631\|GO:0043229_0.631\|GO:0044238_0.630\|GO:0009058_0.624\|GO:0060255_0.624\|GO:0031323_0.621\|GO:0044237_0.621\|GO:0080090_0.618\|GO:0009059_0.616\|GO:0010467_0.616\|GO:0044249_0.616\|GO:0051716_0.614\|GO:0043227_0.609\|GO:0009889_0.607\|GO:0007154_0.600\|GO:0031326_0.600\|GO:0043231_0.599\|GO:0006139_0.598\|GO:0005488_0.596\|GO:0010468_0.595\|GO:0010556_0.595\|GO:0023052_0.593\|GO:0034654_0.591\|GO:0090304_0.582\|GO:0141187_0.582\|GO:0016070_0.578\|GO:0032774_0.578\|GO:0019219_0.572\|GO:0051252_0.572\|GO:0007165_0.570\|GO:0048519_0.568\|GO:0006351_0.567\|GO:2001141_0.565\|GO:0006355_0.560\|GO:0048523_0.554\|GO:0007166_0.542\|GO:0005634_0.511\|GO:0009893_0.501	IPR001132+402-574_403-573_404-598+\|IPR003619+43-154_49-150+\|IPR008984+387-588+\|IPR013019+9-156+\|IPR013790+40-594+\|IPR017855+395-598+\|IPR036578+28-155_41-150+	SM00523+43-154+\|SM00524+402-574+	PF03165+49-150+MH1_domain\|PF03166+403-573+MH2_domain	—	PTHR13703+40-594+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	226-310	2.000	1-225;311-598	1mk2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.783	66339.130	6.818	3.000	22.074	9.866	48.495	51.505	11.873	10.201	52.508

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	2257.912	2383.285	1519.330	921.662	1018.311	829.390	1061.580	936.389	1626.344	5407.377	3786.934

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.880	-1.508	-0.612	—	-0.281	0.366	—	0.323	—	—	—	—	—

No JSON data available for plots.

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