Hg_chrom2_TN10mRNA_2430
Organism: Heterodera glycines Gene Locus: chr2:648177-653037 Feature type: polypeptideProtein Sequence
Length: 469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.537 | 0.775 | 1.25 | 1.137 | 0.547 | 0.635 | 1.386 | 1.564 | 1.412 | 1.034 | 2.132 | 1.481 | 1.148 | 1.001 | 0.792 | 0.594 | 0.743 | 0.328 | 0.941 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2324
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.700
|
0.252
|
0.012
|
0.572
|
0.106
|
0.161
|
0.154
|
0.052
|
0.187
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006567
|
1.000
|
1.000
|
Hsc_gene_26094.t1
|
Hsc_gene_26094.t1
|
— |
Q8HXX2.3 Mannose-6-phosphate isomerase [Macaca fascicularis]
|
KAH7710919.1 Protein C05C8.7 [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004476|GO:0005975|GO:0008270|GO:0009298
|
GO:0008150_0.870|GO:0003674_0.793|GO:0003824_0.676|GO:0009987_0.651|GO:0005575_0.585|GO:0004476_0.580|GO:0016853_0.580|GO:0016860_0.580|GO:0016861_0.580|GO:0110165_0.579|GO:0008152_0.574|GO:0044238_0.553
|
IPR001250+3-396+|IPR011051+3-405+|IPR014710+6-414_8-283+|IPR016305+1-419_3-415_7-25_42-57_115-138_228-243_244-263_263-282_282-301+|IPR018050+115-123+|IPR046457+6-139+|IPR046458+170-244+
|
— |
PF20511+6-139+Phosphomannose_isomerase_type_I,_catalytic_domain|PF20512+170-244+Phosphomannose_isomerase_type_I,_helical_insertion_domain
|
— |
PTHR10309+3-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-469
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
53120.790
|
7.804
|
9.500
|
25.586
|
11.727
|
43.497
|
56.503
|
14.499
|
11.087
|
46.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
538.107
|
86.349
|
334.005
|
532.947
|
974.614
|
782.029
|
145.222
|
519.512
|
98.962
|
1014.494
|
622.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.724
|
2.489
|
0.782
|
0.838
|
— |
-2.422
|
-0.702
|
-1.696
|
— | — | — | — | — |
No JSON data available for plots.