SCN Proteipedia

Hg_chrom2_TN10mRNA_2432

Organism: Heterodera glycines Gene Locus: chr2:655246-659439 Feature type: polypeptide

Protein Sequence

Length: 355

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.524	1.245	1.076	0.68	1.502	1.3	0.436	1.268	2.191	1.294	1.152	1.988	1.487	0.379	1.035	0.724	1.016	0.811	0.65	0.497	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2326	—	—	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.176	0.185	0.012	0.488	0.054	0.317	0.375	0.005	0.616	0.118

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001769	2.000	2.000	Hsc_gene_24111.t1;Hsc_gene_26095.t1	Hsc_gene_26095.t1	—	P28052.3 Guanine nucleotide-binding protein alpha-3 subunit [Caenorhabditis elegans]	KAH7726207.1 GPA-3 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525\|GO:0007165\|GO:0007186\|GO:0007188\|GO:0019001\|GO:0031683	GO:0008150_0.902\|GO:0005575_0.888\|GO:0110165_0.883\|GO:0009987_0.770\|GO:0016020_0.769\|GO:0071944_0.748\|GO:0005886_0.715\|GO:0050896_0.715\|GO:0005622_0.678\|GO:0003674_0.672\|GO:0065007_0.662\|GO:0050789_0.645\|GO:0050794_0.624\|GO:0051716_0.608\|GO:0023052_0.574\|GO:0007154_0.568\|GO:0007165_0.556\|GO:0005737_0.533\|GO:0043226_0.524	IPR001019+13-354_15-344_15-354_32-355_34-349_35-50_169-191_198-215_220-248_266-275+\|IPR001408+187-197_280-292_344-355+\|IPR011025+61-183_62-182+\|IPR027417+31-353_35-344+	SM00275+13-354+	PF00503+15-344+G-protein_alpha_subunit	G3DSA:1.10.400.10:FF:000011+62-182+Guanine_nucleotide-binding_protein_alpha-1_subunit\|G3DSA:3.40.50.300:FF:000692+29-81+Guanine_nucleotide-binding_protein_subunit_alpha\|G3DSA:3.40.50.300:FF:003800+172-355+Guanine_nucleotide-binding_protein_G(k)_subunit_alpha	PTHR10218+15-354+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-355	9plo_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.686	41219.570	5.873	-3.500	30.141	10.423	51.831	48.169	15.211	14.930	40.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	61.372	83.651	157.837	93.495	42.406	20.118	27.438	62.783	23.427	68.034	48.917

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.687	—	-0.648	-1.175	-1.060	—	1.538	-1.056	—	—	—	—	—

No JSON data available for plots.

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