Hg_chrom2_TN10mRNA_2436
Organism: Heterodera glycines Gene Locus: chr2:685050-687784 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.806 | 0.883 | 0.502 | 0.809 | 1.369 | 0.751 | 1.214 | 1.402 | 0.918 | 0.956 | 0.857 | 1.618 | 1.307 | 0.693 | 1.11 | 1.035 | 0.736 | 1.12 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2330
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.578
|
0.125
|
0.036
|
0.394
|
0.201
|
0.104
|
0.086
|
0.020
|
0.143
|
0.161
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006568
|
1.000
|
1.000
|
Hsc_gene_17713.t2
|
Hsc_gene_17702.t1;Hsc_gene_17705.t1;Hsc_gene_17710.t1;Hsc_gene_17713.t1;Hsc_gene_17713.t2;Hsc_gene_17715.t1
|
— | — |
KRZ71847.1 Alpha-(1,3)-fucosyltransferase 5 [Trichinella papuae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.936|GO:0003674_0.839|GO:0008152_0.808|GO:0003824_0.694|GO:0070085_0.675|GO:0016740_0.673|GO:0036065_0.670|GO:0008417_0.650|GO:0016757_0.650|GO:0016758_0.650
|
IPR001503+13-81_15-108+|IPR038577+5-65+
|
— |
PF00852+13-81+Glycosyltransferase_family_10_(fucosyltransferase)_C-term
|
— |
PTHR48350+15-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-206
|
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
22997.900
|
7.350
|
2.500
|
21.845
|
12.621
|
49.029
|
50.971
|
12.136
|
9.709
|
52.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
24.416
|
0.154
|
1.082
|
1.165
|
1.000
|
0.641
|
1.220
|
5.424
|
0.000
|
102.810
|
58.749
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-7.452
|
— |
-6.317
|
— | — |
No JSON data available for plots.