Hg_chrom2_TN10mRNA_2437
Organism: Heterodera glycines Gene Locus: chr2:701546-706383 Feature type: polypeptideProtein Sequence
Length: 632
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.368 | 2.576 | 0.892 | 0.6 | 1.714 | 0.811 | 0.377 | 0.949 | 1.582 | 1.39 | 1.774 | 1.582 | 1.978 | 0.304 | 0.614 | 0.769 | 0.597 | 0.527 | 0.73 | 1.07 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2331
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.823
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
EQKRKGKNGK,KRQRLNKYFEQLSKKKNE,KKKEQQNKKAKNINVRKNK,KKEQQNKKAKNINVRKNKN,RKNKNNNNSEKEMTEQKRK
|
— | — | — | — |
1-21
|
0.880
|
1.000
|
1.000
|
1.000
|
0.657
|
0.121
|
0.008
|
0.486
|
0.150
|
0.077
|
0.180
|
0.024
|
0.161
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001770
|
4.000
|
0.000
|
0.000
|
— | — | — |
KAI3416182.1 hypothetical protein GPALN_005728 [Globodera pallida]
|
AFS34392
|
0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
420-575
|
2.000
|
1-419;576-632
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
74932.670
|
6.908
|
3.000
|
31.804
|
13.608
|
55.063
|
44.937
|
16.614
|
15.190
|
38.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
985.384
|
1.861
|
33.728
|
32.044
|
20.070
|
13.532
|
4.848
|
3.554
|
309.229
|
4038.021
|
2439.967
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.964
|
3.982
|
— |
-0.711
|
— |
-1.487
|
-2.026
|
— |
-3.788
|
— |
-7.087
|
— | — |