Hg_chrom2_TN10mRNA_2438
Organism: Heterodera glycines Gene Locus: chr2:706487-710907 Feature type: polypeptideProtein Sequence
Length: 688
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.724 | 0.714 | 0.551 | 1.284 | 1.677 | 0.433 | 1.163 | 2.099 | 1.296 | 1.476 | 1.453 | 1.898 | 0.727 | 0.356 | 0.81 | 0.62 | 0.595 | 1.23 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.849
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKWK,KPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.525
|
0.324
|
0.007
|
0.655
|
0.265
|
0.088
|
0.119
|
0.033
|
0.142
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001770
|
4.000
|
0.000
|
0.000
|
— | — |
Q9NRJ5.2 Poly(A) polymerase beta [Homo sapiens]
|
XP_002432474.1 Poly A, polymerase alpha, putative [Pediculus humanus corporis];EEB19736.1 Poly A, polymerase alpha, putative [Pediculus humanus corporis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.722|GO:0110165_0.722|GO:0005622_0.681|GO:0016020_0.625|GO:0008150_0.619|GO:0043226_0.615|GO:0043229_0.599|GO:0043227_0.565|GO:0003674_0.553|GO:0043231_0.552|GO:0009987_0.506
|
IPR007012+409-548+|IPR043519+220-384_232-397+
|
— |
PF04928+409-548+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+263-640+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-688
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
80094.530
|
7.321
|
7.000
|
25.436
|
13.953
|
48.837
|
51.163
|
13.808
|
11.628
|
38.808
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
692.437
|
0.770
|
24.302
|
46.226
|
30.723
|
115.653
|
7.088
|
7.118
|
164.209
|
2819.301
|
1681.404
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.763
|
5.778
|
1.032
|
-0.618
|
1.926
|
-4.025
|
-4.124
|
— |
-4.174
|
— |
-6.206
|
— | — |
No JSON data available for plots.