Hg_chrom2_TN10mRNA_2439
Organism: Heterodera glycines Gene Locus: chr2:712260-713891 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.117 | 0.847 | 0.361 | 1.028 | 0.386 | 2.292 | 2.286 | 0.662 | 0.589 | 0.582 | 0.301 | 1.558 | 0.644 | 3.693 | 0.608 | 0.52 | 0.869 | 0.602 | 0.255 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2333
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.053
|
0.074
|
0.008
|
0.100
|
0.414
|
0.253
|
0.328
|
0.002
|
0.727
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006569
|
1.000
|
1.000
|
Hsc_gene_25952.t1
|
Hsc_gene_25952.t1
|
— |
Q17459.2 Putative cuticle collagen 145 [Caenorhabditis elegans]
|
KAF7635243.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+5-58_10-58+|IPR008160+156-214_224-282+|IPR050632+18-293+
|
SM01088+5-58+
|
PF01391+156-214_224-282+Collagen_triple_helix_repeat_(20_copies)|PF01484+10-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+18-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
53-302
|
1.000
|
1-52
|
9ius_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.929
|
29715.460
|
7.803
|
4.000
|
10.596
|
4.636
|
32.119
|
67.881
|
6.291
|
4.305
|
69.536
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
649.344
|
48.150
|
4.947
|
22.037
|
1115.927
|
5917.722
|
31.322
|
151.521
|
0.000
|
106.519
|
60.868
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.520
|
-1.264
|
2.271
|
5.629
|
2.423
|
-7.556
|
-5.406
|
-2.131
|
-7.550
|
5.319
|
— | — | — |
No JSON data available for plots.