Hg_chrom2_TN10mRNA_2447
Organism: Heterodera glycines Gene Locus: chr2:726501-737322 Feature type: polypeptideProtein Sequence
Length: 1,426
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 2.022 | 0.816 | 0.58 | 1.473 | 1.385 | 0.426 | 1.157 | 2.01 | 1.279 | 1.689 | 1.485 | 1.734 | 0.499 | 0.472 | 0.761 | 0.632 | 0.521 | 1.187 | 0.928 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2341
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2447
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKWK,KRQRLNKYLEQILKKKDE,KKKEQQNKKAKNINVRKNK,KKEQQNKKAKNINVRKNKNNNSAKETTEQKRKGKNGKN
|
— | — | — | — |
1-20
|
0.867
|
1.000
|
0.000
|
0.000
|
0.630
|
0.187
|
0.007
|
0.651
|
0.142
|
0.133
|
0.133
|
0.018
|
0.108
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001770
|
4.000
|
0.000
|
0.000
|
— | — |
Q9NRJ5.2 Poly(A) polymerase beta [Homo sapiens]
|
XP_002432474.1 Poly A, polymerase alpha, putative [Pediculus humanus corporis];EEB19736.1 Poly A, polymerase alpha, putative [Pediculus humanus corporis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.744|GO:0110165_0.744|GO:0005622_0.705|GO:0016020_0.656|GO:0043226_0.649|GO:0008150_0.630|GO:0043229_0.630|GO:0043227_0.587|GO:0003674_0.561|GO:0043231_0.560|GO:0009987_0.529
|
IPR007012+1147-1286+|IPR043519+960-1119_1009-1135+
|
— |
PF04928+1147-1286+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1003-1378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
536-689
|
2.000
|
1-535;690-1426
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
167283.450
|
7.683
|
18.500
|
29.102
|
13.254
|
52.384
|
47.616
|
15.778
|
13.324
|
38.008
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
485.598
|
1.843
|
3.656
|
70.936
|
27.013
|
19.933
|
5.056
|
3.214
|
97.210
|
2002.213
|
1185.784
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.133
|
4.392
|
-1.427
|
— |
-1.975
|
-2.755
|
— |
-4.465
|
— |
-5.885
|
— | — |