Hg_chrom2_TN10mRNA_2455
Organism: Heterodera glycines Gene Locus: chr2:757050-763572 Feature type: polypeptideProtein Sequence
Length: 1,513
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.53 | 1.86 | 0.973 | 0.296 | 2.027 | 1.0 | 0.464 | 0.892 | 1.865 | 1.018 | 2.253 | 1.439 | 1.34 | 0.394 | 0.472 | 0.812 | 0.737 | 0.601 | 0.915 | 0.505 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2349
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2455
|
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKKIEEYFEGLRRKWD,KRQAKIIWEELKKMKV,KKGIEWKKWETDREKQK,KKEDIKEAEENLEKIKKI,KKSKTKKEGTADGGKKRTH,KKILEILNNELVTLKKKES,KQKKSKTKKEGTADGGKKR
|
— | — | — | — |
1-21
|
0.988
|
1.000
|
0.000
|
0.000
|
0.470
|
0.128
|
0.006
|
0.552
|
0.117
|
0.184
|
0.190
|
0.008
|
0.248
|
0.255
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001108
|
1.000
|
4.000
|
Hsc_gene_13421.t1;Hsc_gene_13425.t1;Hsc_gene_13426.t1;Hsc_gene_8170.t1
|
— | — | — |
KAI3412036.1 hypothetical protein GPALN_002088 [Globodera pallida]
|
WP_241394723
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
45-113;1143-1209;1304-1380;1503-1513
|
4.000
|
1-44;114-1142;1210-1303;1381-1502
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
175869.860
|
7.084
|
8.500
|
36.484
|
9.518
|
58.559
|
41.441
|
18.969
|
17.515
|
38.863
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2267.717
|
110.535
|
1525.161
|
40.214
|
21.406
|
26.393
|
3.239
|
20.568
|
11336.013
|
763.934
|
5294.825
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.559
|
-1.596
|
-5.138
|
-0.947
|
— |
-3.019
|
— |
-2.537
|
3.745
|
-7.952
|
-4.822
|
— | — |