Hg_chrom2_TN10mRNA_2458
Organism: Heterodera glycines Gene Locus: chr2:776779-779692 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.258 | 0.92 | 1.055 | 0.455 | 0.792 | 1.285 | 0.597 | 0.923 | 0.88 | 1.711 | 1.399 | 1.242 | 1.759 | 0.812 | 0.269 | 0.98 | 0.735 | 1.119 | 0.203 | 0.776 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2352
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — |
31-58
|
0.963
|
— | — |
0.000
|
— | — |
0.435
|
0.346
|
0.175
|
0.567
|
0.177
|
0.192
|
0.169
|
0.111
|
0.156
|
0.742
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006574
|
1.000
|
1.000
|
Hsc_gene_13416.t1
|
Hsc_gene_13416.t1
|
— |
Q5R899.1 Serpin B6 [Pongo abelii]
|
KAF7634179.1 SERPIN domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.800|GO:0110165_0.795|GO:0008150_0.672|GO:0005622_0.584|GO:0003674_0.565|GO:0009987_0.557|GO:0005737_0.551|GO:0016020_0.544|GO:0071944_0.522|GO:0065007_0.501
|
IPR000215+14-375+|IPR023796+14-375_19-379+|IPR036186+8-377+|IPR042178+17-346+|IPR042185+185-375+
|
SM00093+19-379+
|
PF00079+14-375+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+14-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
41602.210
|
7.385
|
3.500
|
22.955
|
11.082
|
43.272
|
56.728
|
12.401
|
10.554
|
49.868
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
468.012
|
393.744
|
758.828
|
216.317
|
92.353
|
513.143
|
31.013
|
1941.147
|
20.343
|
552.341
|
324.342
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
-1.001
|
-1.703
|
-1.260
|
2.490
|
-4.048
|
1.820
|
-5.834
|
-4.884
|
— | — | — | — |
No JSON data available for plots.