Hg_chrom2_TN10mRNA_2464
Organism: Heterodera glycines Gene Locus: chr2:798447-806839 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 1.042 | 0.481 | 0.913 | 0.577 | 0.888 | 0.873 | 1.222 | 2.127 | 1.349 | 0.648 | 1.198 | 2.602 | 0.862 | 0.499 | 1.193 | 0.801 | 0.987 | 0.627 | 0.539 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2358
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.405
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
KKTEMRRAWLNKADKQKEK
|
18-38
|
0.980
|
45-65
|
0.826
|
— | — |
0.000
|
— | — |
0.030
|
0.133
|
0.029
|
0.127
|
0.412
|
0.617
|
0.387
|
0.005
|
0.527
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006577
|
1.000
|
1.000
|
Hsc_gene_13407.t1
|
Hsc_gene_13407.t1
|
— |
Q9C9J0.2 Lysine histidine transporter-like 5 [Arabidopsis thaliana]
|
KAF7635198.1 Aa_trans domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.776|GO:0110165_0.776|GO:0016020_0.738|GO:0008150_0.659|GO:0005622_0.618|GO:0005737_0.618|GO:0009987_0.595|GO:0043226_0.588|GO:0043229_0.579|GO:0043227_0.574|GO:0003674_0.569|GO:0043231_0.565|GO:0006810_0.553|GO:0051179_0.553|GO:0051234_0.553
|
IPR013057+22-374+
|
— |
PF01490+22-374+Transmembrane_amino_acid_transporter_protein
|
G3DSA:1.20.1740.10:FF:000052+19-440+Lysine_histidine_transporter-like_3
|
PTHR48017+24-421+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
53595.700
|
7.908
|
9.000
|
15.275
|
14.460
|
36.456
|
63.544
|
9.165
|
6.110
|
50.305
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
592.554
|
23.085
|
123.221
|
146.724
|
95.951
|
424.081
|
137.203
|
80.994
|
320.736
|
1965.150
|
1260.402
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.187
|
2.533
|
0.361
|
-0.647
|
2.159
|
-1.619
|
-2.496
|
0.901
|
— | — | — | — | — |
No JSON data available for plots.