Hg_chrom2_TN10mRNA_2467
Organism: Heterodera glycines Gene Locus: chr2:813438-815840 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.204 | 0.797 | 2.198 | 1.195 | 0.919 | 0.474 | 1.394 | 1.594 | 0.592 | 1.026 | 1.406 | 1.328 | 1.226 | 1.87 | 0.911 | 0.784 | 0.724 | 0.919 | 0.82 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2361
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRWSGCDGNCEFAQRFRNR
|
— | — | — | — | — |
0.632
|
0.086
|
0.000
|
— |
0.250
|
0.348
|
0.075
|
0.196
|
0.075
|
0.046
|
0.132
|
0.035
|
0.274
|
0.902
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006579
|
1.000
|
1.000
|
Hsc_gene_13404.t1
|
Hsc_gene_13404.t1
|
— | — |
KAF7635447.1 BPTI/Kunitz inhibitor domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000884+36-98+|IPR036383+34-93_36-97+|IPR039942+32-189+
|
— | — | — |
PTHR20920+32-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
108-159
|
2.000
|
1-107;160-251
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
29077.440
|
8.689
|
14.500
|
30.279
|
11.554
|
50.199
|
49.801
|
18.725
|
11.554
|
47.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
248.776
|
69.341
|
54.268
|
42.365
|
345.685
|
1500.421
|
69.947
|
273.617
|
85.629
|
140.806
|
117.159
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.581
|
-0.847
|
— |
2.998
|
2.133
|
-4.415
|
-2.560
|
-1.827
|
— | — | — | — | — |