Hg_chrom2_TN10mRNA_2468
Organism: Heterodera glycines Gene Locus: chr2:820333-825365 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.28 | 1.359 | 0.899 | 0.387 | 0.749 | 1.498 | 1.338 | 1.011 | 0.549 | 0.82 | 0.987 | 1.058 | 0.936 | 0.691 | 0.871 | 1.766 | 1.031 | 0.511 | 1.21 | 0.529 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2362
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|golgi_apparatus
|
— |
KKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.157
|
0.320
|
0.042
|
0.547
|
0.410
|
0.332
|
0.733
|
0.043
|
0.301
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001773
|
2.000
|
2.000
|
Hsc_gene_13403.t1;Hsc_gene_13403.t2
|
Hsc_gene_13403.t1;Hsc_gene_13403.t2
|
— |
Q9EPJ9.2 ADP-ribosylation factor GTPase-activating protein 1 [Mus musculus]
|
KAF7635450.1 Arf-GAP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0005575_0.848|GO:0110165_0.843|GO:0005622_0.704|GO:0008150_0.632|GO:0043226_0.606|GO:0016020_0.579|GO:0005737_0.557|GO:0043229_0.549|GO:0009987_0.522
|
IPR001164+7-124_8-107_19-38_38-55_59-80+|IPR037278+6-106+|IPR038508+1-137+
|
SM00105+7-124+
|
PF01412+8-107+Putative_GTPase_activating_protein_for_Arf
|
G3DSA:1.10.220.150:FF:000014+1-133+ADP-ribosylation_factor_GTPase-activating_protein
|
PTHR46395+1-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
140-186;308-445
|
2.000
|
1-139;187-307
|
3o47_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
47027.650
|
9.046
|
10.500
|
22.247
|
8.764
|
52.584
|
47.416
|
12.809
|
9.438
|
59.775
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
723.010
|
600.164
|
765.246
|
744.684
|
943.656
|
1169.213
|
1070.001
|
865.613
|
323.039
|
611.423
|
487.830
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.174
|
— |
0.310
|
0.324
|
— |
-0.540
|
0.449
|
— | — | — | — | — |
No JSON data available for plots.