SCN Proteipedia

Hg_chrom2_TN10mRNA_2473

Organism: Heterodera glycines Gene Locus: chr2:846873-853184 Feature type: polypeptide

Protein Sequence

Length: 678

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.892	1.098	0.778	0.407	1.45	1.475	0.597	1.327	1.54	1.096	0.916	1.041	1.352	1.135	1.234	0.864	1.088	0.626	0.681	0.781	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2366	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom2_TN10mRNA_2473	9-Migratory	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	RRYLEYQKQWKKFRH	12-52	0.999	—	—	—	—	0.000	—	—	0.098	0.175	0.255	0.104	0.213	0.603	0.307	0.013	0.732	0.090

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001774	2.000	2.000	Hsc_gene_13394.t1;Hsc_gene_13394.t2	Hsc_gene_13394.t1;Hsc_gene_13394.t2	—	Q23435.2 TWiK family of potassium channels protein 9 [Caenorhabditis elegans]	KAI3408525.1 Ion channel [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.964\|GO:0009987_0.877\|GO:0051179_0.828\|GO:0006810_0.824\|GO:0051234_0.824\|GO:0003674_0.815\|GO:0005575_0.751\|GO:0110165_0.750\|GO:0016020_0.705\|GO:0006811_0.700\|GO:0055085_0.692\|GO:0006812_0.680\|GO:0030001_0.680\|GO:0034220_0.670\|GO:0006813_0.657\|GO:0098660_0.656\|GO:0098655_0.651\|GO:0098662_0.645\|GO:0005215_0.641\|GO:0015267_0.641\|GO:0022803_0.641\|GO:0022857_0.641\|GO:0005216_0.640\|GO:0015075_0.640\|GO:0071944_0.636\|GO:0005886_0.631\|GO:0071805_0.628\|GO:0005261_0.626\|GO:0008324_0.626\|GO:0015318_0.622\|GO:0022890_0.619\|GO:0046873_0.619\|GO:0005267_0.607\|GO:0015079_0.607	IPR003280+33-551_173-201_380-389+\|IPR013099+160-217_347-421+	—	PF07885+160-217_347-421+Ion_channel	—	PTHR11003+33-551+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	287-335;480-678	2.000	1-286;336-479	6wm0_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.619	77018.320	6.783	3.000	27.729	11.062	50.885	49.115	14.749	12.979	45.575

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	244.434	17.273	234.065	78.526	25.148	99.091	75.233	366.789	388.777	441.771	419.059

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.532	2.046	-1.468	-1.672	1.991	-0.389	1.786	-2.147	—	-2.142	-3.937	—	—

No JSON data available for plots.

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