Hg_chrom2_TN10mRNA_2478
Organism: Heterodera glycines Gene Locus: chr2:870985-873779 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 1.705 | 0.32 | 0.404 | 0.391 | 0.376 | 0.314 | 0.88 | 2.281 | 1.546 | 0.622 | 1.208 | 2.281 | 0.564 | 0.838 | 1.382 | 1.202 | 1.511 | 1.128 | 1.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2370
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2478
|
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.092
|
0.114
|
0.013
|
0.103
|
0.393
|
0.277
|
0.187
|
0.010
|
0.758
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006582
|
1.000
|
1.000
|
Hsc_gene_13384.t1
|
Hsc_gene_13384.t1
|
— |
Q8K458.1 Prokineticin receptor 2 [Mus musculus]
|
KAF7633662.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.810|GO:0005575_0.675|GO:0110165_0.675|GO:0071944_0.639|GO:0016020_0.637|GO:0005886_0.623|GO:0009987_0.608|GO:0003674_0.544|GO:0050896_0.524|GO:0065007_0.512
|
IPR000276+20-44_35-295_53-74_94-116_100-116_188-211_233-257_277-303+|IPR017452+35-295+
|
— |
PF00001+35-295+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+11-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
39218.210
|
9.915
|
17.000
|
14.076
|
17.009
|
39.883
|
60.117
|
9.971
|
4.106
|
47.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
634.553
|
22.913
|
50.508
|
86.471
|
197.707
|
179.603
|
45.840
|
67.163
|
0.000
|
2532.341
|
1447.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
1.778
|
0.883
|
1.162
|
— |
-1.972
|
-1.528
|
— |
-8.334
|
7.291
|
— | — | — |
No JSON data available for plots.