Hg_chrom2_TN10mRNA_2479
Organism: Heterodera glycines Gene Locus: chr2:874817-876457 Feature type: polypeptideProtein Sequence
Length: 157
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.37 | 1.481 | 1.274 | 1.318 | 1.486 | 0.98 | 1.062 | 0.955 | 0.849 | 1.377 | 0.386 | 1.124 | 2.123 | 0.98 | 0.65 | 1.001 | 1.253 | 0.869 | 0.0 | 0.375 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2371
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2479
|
8-Eggs_J4_Males
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-18
|
0.974
|
1.000
|
0.000
|
0.000
|
0.368
|
0.402
|
0.024
|
0.325
|
0.154
|
0.087
|
0.099
|
0.145
|
0.318
|
0.802
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006583
|
1.000
|
1.000
|
Hsc_gene_13383.t1
|
Hsc_gene_13383.t1
|
— |
Q868Z9.2 Papilin [Drosophila melanogaster]
|
KAF7635824.1 BPTI/Kunitz inhibitor domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.737|GO:0005575_0.668|GO:0110165_0.666|GO:0003674_0.627|GO:0005488_0.540|GO:0005515_0.540
|
IPR002223+51-104_52-103_53-103+|IPR036880+46-105_48-104+|IPR050098+40-125+
|
SM00131+51-104+
|
PF00014+52-103+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR10083+40-125+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
135-157
|
1.000
|
1-134
|
4u32_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
17295.240
|
3.996
|
-14.500
|
23.567
|
10.828
|
48.408
|
51.592
|
7.643
|
15.924
|
54.777
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
207.882
|
253.393
|
172.337
|
58.405
|
112.548
|
676.434
|
152.188
|
672.544
|
3.792
|
119.947
|
70.166
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.787
|
-2.254
|
-1.451
|
0.916
|
2.601
|
-2.141
|
— |
-1.998
|
-5.105
|
4.183
|
— | — | — |