Hg_chrom2_TN10mRNA_2483
Organism: Heterodera glycines Gene Locus: chr2:882217-885201 Feature type: polypeptideProtein Sequence
Length: 521
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 1.518 | 1.326 | 1.059 | 1.056 | 1.772 | 0.891 | 0.672 | 1.024 | 0.96 | 0.378 | 0.79 | 0.746 | 0.738 | 0.627 | 0.768 | 1.919 | 1.076 | 1.181 | 0.565 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2374
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2483
|
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRLKLNGTYQSGRYRMK
|
— | — | — | — |
1-26
|
0.955
|
0.996
|
0.000
|
0.000
|
0.269
|
0.175
|
0.016
|
0.419
|
0.139
|
0.073
|
0.070
|
0.020
|
0.254
|
0.853
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006585
|
1.000
|
1.000
|
Hsc_gene_13379.t1
|
— | — |
Q09321.1 Uncharacterized protein F42A8.1 [Caenorhabditis elegans]
|
TKR59780.1 hypothetical protein L596_029405 [Steinernema carpocapsae]
|
No
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
PF23003+306-356_367-432_443-510+Fibronectin_type_I_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-305
|
1.000
|
306-521
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
56420.160
|
4.012
|
-38.500
|
20.537
|
7.486
|
51.056
|
48.944
|
6.910
|
13.628
|
60.653
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
3246.525
|
47.370
|
7.120
|
7.229
|
2517.592
|
30746.769
|
23.311
|
794.114
|
0.000
|
1399.734
|
799.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.957
|
-2.848
|
— |
8.409
|
3.625
|
-10.355
|
-5.387
|
-4.944
|
-11.280
|
— | — | — | — |