Hg_chrom2_TN10mRNA_2484
Organism: Heterodera glycines Gene Locus: chr2:885602-890558 Feature type: polypeptideProtein Sequence
Length: 665
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.259 | 1.094 | 0.311 | 1.053 | 1.118 | 0.913 | 1.579 | 1.069 | 1.26 | 0.911 | 1.061 | 1.629 | 0.983 | 0.859 | 0.816 | 0.937 | 1.025 | 1.966 | 1.106 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2375
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland13|KJ825724.1#tn8jg15008.t1
|
Gland13|KJ8257241#tn8jg15008t1
|
Hsc_gene_1035;Hsc_gene_13378
|
— |
Hg_chrom2_TN10mRNA_2484
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.956
|
1.000
|
0.000
|
0.000
|
0.409
|
0.274
|
0.028
|
0.499
|
0.256
|
0.422
|
0.194
|
0.061
|
0.273
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006586
|
1.000
|
1.000
|
Hsc_gene_13378.t1
|
Hsc_gene_13378.t1
|
— |
O33833.1 Beta-fructosidase [Thermotoga maritima MSB8]
|
QPO14710.1 effector protein GLAND13, partial [Heterodera glycines]
|
WP_085032473
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.732|GO:0005575_0.702|GO:0110165_0.702|GO:0003674_0.647|GO:0003824_0.573|GO:0009987_0.514|GO:0005622_0.507|GO:0016020_0.506
|
IPR001362+149-597+|IPR013148+149-486+|IPR023296+135-505_147-486+|IPR051214+142-616+
|
SM00640+149-597+
|
PF00251+149-486+Glycosyl_hydrolases_family_32_N-terminal_domain
|
— |
PTHR43101+142-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
665-665
|
1.000
|
1-664
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
76019.060
|
6.236
|
-3.500
|
25.714
|
15.338
|
46.917
|
53.083
|
13.383
|
12.331
|
47.820
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1416.743
|
1.511
|
3.763
|
1635.380
|
1976.691
|
101.173
|
164.887
|
98.177
|
630.653
|
4232.166
|
2688.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
9.927
|
8.862
|
0.242
|
-4.273
|
0.714
|
— |
0.894
|
— | — | — | — | — |