Hg_chrom2_TN10mRNA_2485
Organism: Heterodera glycines Gene Locus: chr2:893557-897247 Feature type: polypeptideProtein Sequence
Length: 345
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 1.483 | 1.001 | 0.4 | 1.498 | 1.115 | 0.587 | 1.739 | 2.19 | 1.528 | 0.878 | 1.535 | 1.127 | 0.334 | 0.651 | 0.663 | 0.855 | 0.922 | 0.0 | 0.767 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2376
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2485
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-24
|
0.546
|
0.528
|
0.000
|
0.000
|
0.589
|
0.229
|
0.040
|
0.606
|
0.436
|
0.370
|
0.230
|
0.043
|
0.320
|
0.316
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006587
|
1.000
|
1.000
|
Hsc_gene_13377.t1
|
Hsc_gene_13377.t1
|
— |
P20072.2 Annexin A7 [Bos taurus]
|
QLK97565.1 annexin [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.903|GO:0110165_0.898|GO:0016020_0.792|GO:0008150_0.779|GO:0071944_0.740|GO:0003674_0.704|GO:0009987_0.664|GO:0005622_0.661|GO:0043226_0.648|GO:0005886_0.642|GO:0005737_0.622|GO:0043227_0.619|GO:0005488_0.571|GO:0043229_0.532|GO:0051179_0.521|GO:0006810_0.513|GO:0051234_0.513
|
IPR001464+55-77_95-111_122-143_204-230_284-304_328-341+|IPR018502+43-112_49-108_58-110_113-183_117-181_130-181_188-267_200-265_215-265_271-342_275-340_289-340+|IPR037104+28-114_46-344_115-186_187-271_273-344+
|
SM00335+58-110_130-181_215-265_289-340+
|
PF00191+49-108_117-181_200-265_275-340+Annexin
|
G3DSA:1.10.220.10:FF:000001+272-343+Annexin|G3DSA:1.10.220.10:FF:000002+185-271+Annexin
|
PTHR10502+32-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
38787.460
|
4.807
|
-13.000
|
26.957
|
10.145
|
47.536
|
52.464
|
12.464
|
14.493
|
43.768
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
skyblue3
|
430.513
|
5.002
|
38.056
|
117.201
|
38.532
|
13.476
|
13.408
|
5.836
|
648.167
|
1310.552
|
1026.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.693
|
4.404
|
1.734
|
-1.635
|
-1.501
|
— |
-1.317
|
1.346
|
— | — |
-4.585
|
— | — |