Hg_chrom2_TN10mRNA_2493
Organism: Heterodera glycines Gene Locus: chr2:918851-920320 Feature type: polypeptideProtein Sequence
Length: 228
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 1.53 | 0.638 | 1.815 | 0.146 | 1.574 | 1.253 | 0.658 | 1.559 | 1.008 | 0.332 | 2.322 | 2.193 | 1.181 | 0.895 | 0.877 | 1.007 | 0.399 | 1.687 | 1.161 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2381
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.670
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— |
24-45
|
0.986
|
17-39
|
0.910
|
1-17
|
0.994
|
1.000
|
0.000
|
0.000
|
0.116
|
0.327
|
0.042
|
0.143
|
0.237
|
0.041
|
0.052
|
0.008
|
0.197
|
0.975
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003185
|
2.000
|
1.000
|
Hsc_gene_13370.t1
|
Hsc_gene_13370.t1
|
— | — | — |
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.865|GO:0110165_0.865|GO:0016020_0.765|GO:0071944_0.741|GO:0043226_0.683|GO:0043227_0.683|GO:0005576_0.663|GO:0005615_0.618|GO:0030312_0.599|GO:0031982_0.591|GO:0043230_0.566|GO:0065010_0.565|GO:1903561_0.565|GO:0070062_0.563|GO:0031012_0.556
|
IPR001304+67-205_80-136+|IPR016186+51-217+|IPR016187+61-218+
|
— |
PF00059+80-136+Lectin_C-type_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
25400.260
|
8.214
|
6.500
|
12.281
|
15.351
|
37.281
|
62.719
|
7.895
|
4.386
|
52.632
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
25.141
|
0.310
|
0.495
|
0.765
|
0.816
|
258.817
|
3.153
|
1.375
|
0.000
|
10.344
|
5.911
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
8.309
|
-6.352
|
-7.657
|
— | — | — | — | — | — |