Hg_chrom2_TN10mRNA_2497
Organism: Heterodera glycines Gene Locus: chr2:945639-946358 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 1.583 | 0.762 | 0.722 | 0.785 | 0.94 | 0.436 | 0.785 | 1.163 | 0.778 | 0.635 | 2.464 | 2.763 | 1.108 | 1.282 | 0.823 | 0.858 | 0.952 | 2.014 | 1.078 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2385
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
23-62
|
0.652
|
32-64
|
0.982
|
— | — |
0.000
|
— | — |
0.586
|
0.067
|
0.038
|
0.419
|
0.133
|
0.103
|
0.047
|
0.067
|
0.164
|
0.337
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000087
|
1.000
|
15.000
|
Hsc_gene_10093.t1;Hsc_gene_10094.t1;Hsc_gene_11755.t1;Hsc_gene_15682.t1;Hsc_gene_15683.t1;Hsc_gene_17733.t1;Hsc_gene_18420.t1;Hsc_gene_19308.t1;Hsc_gene_20824.t1;Hsc_gene_23820.t1;Hsc_gene_7668.t1;Hsc_gene_9101.t1;Hsc_gene_9101.t2;Hsc_gene_9184.t1;Hsc_gene_9938.t1
|
Hsc_gene_11755.t1;Hsc_gene_9101.t1;Hsc_gene_9101.t2
|
— | — |
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+7-98+
|
— |
PF10551+7-98+MULE_transposase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
22263.600
|
8.470
|
4.500
|
20.942
|
17.801
|
42.408
|
57.592
|
12.042
|
8.901
|
48.168
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
0.760
|
0.613
|
3.419
|
1.486
|
0.860
|
1.391
|
0.000
|
1.095
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.258
|
— | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.