Hg_chrom2_TN10mRNA_2500
Organism: Heterodera glycines Gene Locus: chr2:953124-957095 Feature type: polypeptideProtein Sequence
Length: 591
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 2.086 | 1.169 | 1.984 | 1.551 | 1.041 | 0.443 | 1.269 | 1.542 | 0.732 | 1.769 | 1.194 | 1.363 | 0.716 | 0.483 | 1.039 | 0.361 | 0.487 | 0.521 | 0.647 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2388
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKERIKQNVASSSKRLEK,KKIISPKILNVLKLKGKSK,SKRLEKSHEESGDKKENRAIHKKIISPK
|
— | — | — | — |
1-24
|
0.954
|
0.885
|
0.000
|
0.000
|
0.455
|
0.137
|
0.023
|
0.595
|
0.240
|
0.129
|
0.119
|
0.006
|
0.118
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000192
|
11.000
|
0.000
|
0.000
|
— | — |
Q9SKC3.1 Probable E3 ubiquitin-protein ligase ARI9 [Arabidopsis thaliana]
|
KAF7627281.1 malate dehydrogenase [Meloidogyne graminicola]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.812|GO:0005575_0.737|GO:0110165_0.737|GO:0005622_0.669|GO:0009987_0.643|GO:0003674_0.610|GO:0008152_0.609|GO:0043170_0.609|GO:0044238_0.592|GO:0065007_0.587|GO:0043226_0.584|GO:0016020_0.578|GO:0050789_0.574|GO:0050794_0.562|GO:0043229_0.558|GO:0019538_0.530|GO:0005737_0.529|GO:0043227_0.527|GO:0043231_0.512
|
IPR044066+319-557+|IPR047545+423-485+|IPR051628+134-565+
|
— | — | — |
PTHR22770+134-565+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-311
|
2.000
|
1-128;312-591
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
67285.090
|
6.241
|
-2.500
|
32.318
|
10.321
|
54.822
|
45.178
|
16.582
|
15.736
|
47.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
10.800
|
6.524
|
7.833
|
52.202
|
1.975
|
1.382
|
1.929
|
2.225
|
25.962
|
0.000
|
11.126
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.866
|
2.853
|
-4.752
|
— | — | — | — | — | — | — | — | — |