Hg_chrom2_TN10mRNA_2504
Organism: Heterodera glycines Gene Locus: chr2:971355-975699 Feature type: polypeptideProtein Sequence
Length: 512
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 1.453 | 0.994 | 3.3 | 1.725 | 0.901 | 0.488 | 1.465 | 0.694 | 1.082 | 1.45 | 1.723 | 1.411 | 0.826 | 0.518 | 0.67 | 0.512 | 0.444 | 1.052 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2392
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.524
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.287
|
0.020
|
0.594
|
0.212
|
0.148
|
0.112
|
0.003
|
0.105
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000192
|
11.000
|
0.000
|
0.000
|
— | — |
Q6T486.1 Probable E3 ubiquitin-protein ligase rbrA [Dictyostelium discoideum]
|
KAF7627281.1 malate dehydrogenase [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.770|GO:0005575_0.655|GO:0110165_0.655|GO:0005622_0.596|GO:0003674_0.564|GO:0009987_0.555|GO:0008152_0.507|GO:0043170_0.507
|
IPR013083+44-134+|IPR044066+263-512+|IPR051628+136-235+
|
— |
PF22191+461-499+IBR_domain
|
— |
PTHR22770+136-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-512
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
58433.800
|
5.241
|
-11.500
|
30.859
|
11.914
|
48.438
|
51.562
|
15.039
|
15.820
|
48.047
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
25.020
|
1.739
|
10.914
|
26.424
|
6.216
|
28.757
|
5.988
|
1.934
|
79.710
|
18.941
|
44.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.420
|
3.779
|
1.382
|
-2.122
|
2.226
|
-2.254
|
-4.001
|
1.776
|
— | — | — | — | — |
No JSON data available for plots.