Hg_chrom2_TN10mRNA_2506
Organism: Heterodera glycines Gene Locus: chr2:988941-991062 Feature type: polypeptideProtein Sequence
Length: 256
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 2.362 | 0.852 | 0.269 | 1.562 | 1.202 | 0.326 | 0.195 | 1.128 | 1.636 | 1.184 | 1.608 | 1.628 | 0.451 | 0.638 | 0.837 | 1.089 | 0.592 | 0.601 | 0.804 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2394
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_13361
|
— |
Hg_chrom2_TN10mRNA_2506
|
21-Not_Clustered
|
0.842
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-28
|
0.913
|
1.000
|
0.000
|
0.000
|
0.499
|
0.342
|
0.029
|
0.562
|
0.225
|
0.373
|
0.239
|
0.054
|
0.131
|
0.432
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003187
|
2.000
|
1.000
|
Hsc_gene_13361.t1
|
Hsc_gene_13361.t1
|
— |
Q99JG3.3 Annexin A13 [Mus musculus]
|
RCN39980.1 Annexin [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.899|GO:0110165_0.899|GO:0016020_0.787|GO:0008150_0.757|GO:0071944_0.747|GO:0005622_0.707|GO:0043226_0.682|GO:0009987_0.668|GO:0003674_0.655|GO:0043227_0.649|GO:0005737_0.642|GO:0005886_0.636|GO:0043229_0.588|GO:0005488_0.577|GO:0043231_0.540|GO:0051179_0.526|GO:0065007_0.522|GO:0050789_0.512
|
IPR018502+46-94_114-189_134-187+|IPR037104+24-245_32-112_116-197+
|
SM00335+134-187+
|
PF00191+46-94_134-187+Annexin
|
— |
PTHR10502+32-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-256
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
29269.190
|
4.662
|
-7.500
|
25.391
|
9.766
|
52.734
|
47.266
|
11.328
|
14.062
|
45.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
65.926
|
0.621
|
2.195
|
391.756
|
26.271
|
1.785
|
3.844
|
3.185
|
67.724
|
76.512
|
72.746
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
9.185
|
7.593
|
-3.925
|
-3.874
|
— | — | — | — | — | — | — | — |