Hg_chrom2_TN10mRNA_2509
Organism: Heterodera glycines Gene Locus: chr2:999417-1002803 Feature type: polypeptideProtein Sequence
Length: 545
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.704 | 1.963 | 0.734 | 2.404 | 1.56 | 1.223 | 0.524 | 1.376 | 1.59 | 0.967 | 1.863 | 1.187 | 0.866 | 0.67 | 0.487 | 0.996 | 0.451 | 0.5 | 0.423 | 0.594 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2396
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2509
|
30-pJ2
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRLEKSHQESGDKKENR,KKERIKQNVASSSKRLEK
|
— | — | — | — |
1-24
|
0.954
|
0.885
|
0.000
|
0.000
|
0.545
|
0.157
|
0.032
|
0.605
|
0.245
|
0.096
|
0.123
|
0.007
|
0.110
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000192
|
11.000
|
0.000
|
0.000
|
— | — |
Q9SKC3.1 Probable E3 ubiquitin-protein ligase ARI9 [Arabidopsis thaliana]
|
KAF7627281.1 malate dehydrogenase [Meloidogyne graminicola]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.822|GO:0005575_0.749|GO:0110165_0.749|GO:0005622_0.671|GO:0009987_0.608|GO:0003674_0.581|GO:0016020_0.560|GO:0005737_0.538|GO:0008152_0.531|GO:0043170_0.531|GO:0043226_0.524|GO:0044238_0.501
|
IPR044066+290-545+|IPR051628+166-531+
|
— |
PF22191+494-532+IBR_domain
|
— |
PTHR22770+166-531+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
125-281
|
2.000
|
1-124;282-545
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
61604.650
|
7.842
|
14.500
|
30.826
|
8.440
|
53.761
|
46.239
|
17.431
|
13.394
|
46.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
88.088
|
5.420
|
7.842
|
218.533
|
10.960
|
2.514
|
4.973
|
3.018
|
289.239
|
73.483
|
165.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.194
|
4.903
|
-4.355
|
-2.109
|
— | — | — | — | — | — | — | — |