Hg_chrom2_TN10mRNA_2516
Organism: Heterodera glycines Gene Locus: chr2:1030897-1034688 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.004 | 0.579 | 1.176 | 1.098 | 1.34 | 1.218 | 0.909 | 1.768 | 0.921 | 0.93 | 1.337 | 1.073 | 1.442 | 0.696 | 0.584 | 0.857 | 1.377 | 0.524 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2403
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2516
|
3-Not_described
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.589
|
0.428
|
0.033
|
0.569
|
0.206
|
0.195
|
0.097
|
0.129
|
0.160
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006594
|
1.000
|
1.000
|
Hsc_gene_13358.t1
|
Hsc_gene_13358.t1
|
— |
P79896.1 Alcohol dehydrogenase class-3 [Sparus aurata]
|
KAI1719381.1 alcohol dehydrogenase groES-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0016491
|
GO:0008150_0.818|GO:0003674_0.768|GO:0005575_0.680|GO:0110165_0.672|GO:0003824_0.659|GO:0008152_0.614|GO:0016491_0.560|GO:0016020_0.552|GO:0009987_0.536|GO:0005622_0.514|GO:0016614_0.511|GO:0016616_0.511
|
IPR002328+68-82+|IPR011032+3-188_330-379+|IPR013149+208-331+|IPR013154+34-166+|IPR036291+171-344+
|
— |
PF00107+208-331+Zinc-binding_dehydrogenase|PF08240+34-166+Alcohol_dehydrogenase_GroES-like_domain
|
G3DSA:3.40.50.720:FF:000003+185-323+S-(hydroxymethyl)glutathione_dehydrogenase|G3DSA:3.90.180.10:FF:000067+18-184+alcohol_dehydrogenase_1-like_isoform_X1
|
PTHR43880+6-377+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
47590.170
|
7.053
|
3.000
|
21.136
|
8.182
|
40.000
|
60.000
|
11.364
|
9.773
|
53.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
913.015
|
47.954
|
3027.286
|
440.073
|
97.005
|
136.630
|
619.669
|
1984.883
|
300.334
|
1386.628
|
921.073
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.753
|
3.061
|
-2.674
|
-2.213
|
— |
2.192
|
3.761
|
-1.538
|
— | — | — | — | — |
No JSON data available for plots.