Hg_chrom2_TN10mRNA_2518
Organism: Heterodera glycines Gene Locus: chr2:1036333-1039254 Feature type: polypeptideProtein Sequence
Length: 321
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.159 | 0.85 | 1.074 | 0.831 | 0.559 | 0.742 | 1.402 | 1.177 | 1.305 | 1.18 | 0.916 | 1.471 | 1.078 | 1.399 | 0.935 | 1.021 | 0.944 | 0.959 | 0.825 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2404
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2518
|
2-Not_Clustered
|
0.457
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.936
|
1.000
|
0.000
|
0.000
|
0.130
|
0.351
|
0.130
|
0.224
|
0.112
|
0.043
|
0.112
|
0.015
|
0.449
|
0.864
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006595
|
2.000
|
0.000
|
0.000
|
— | — | — | — |
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.941|GO:0005575_0.910|GO:0110165_0.910|GO:0003674_0.847|GO:0016020_0.824|GO:0005622_0.810|GO:0008152_0.774|GO:0043226_0.774|GO:0044238_0.765|GO:0043229_0.762|GO:0043170_0.760|GO:0005737_0.745|GO:0043227_0.739|GO:0071944_0.733|GO:0019538_0.728|GO:0043231_0.727|GO:0003824_0.725|GO:0005886_0.720|GO:0140096_0.683|GO:0016787_0.682|GO:0006508_0.679|GO:0008233_0.664|GO:0004175_0.658|GO:0004298_0.650|GO:0070003_0.650|GO:0005773_0.629|GO:0012505_0.619|GO:0005783_0.571
|
IPR001254+70-315_171-310+|IPR009003+119-315+|IPR043504+111-319+|IPR051487+116-316+
|
— |
PF00089+171-310+Trypsin
|
— |
PTHR24256+116-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-321
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
36314.990
|
9.816
|
20.500
|
27.103
|
12.150
|
47.040
|
52.960
|
17.445
|
9.657
|
49.533
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
64.320
|
5.013
|
6.820
|
6.342
|
25.781
|
21.578
|
15.719
|
4.705
|
0.000
|
249.166
|
142.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.985
|
— | — |
-2.315
|
1.887
|
-8.788
|
— | — | — | — |