Hg_chrom2_TN10mRNA_2520
Organism: Heterodera glycines Gene Locus: chr2:1050149-1052344 Feature type: polypeptideProtein Sequence
Length: 412
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.468 | 0.838 | 0.418 | 0.971 | 1.245 | 0.433 | 2.184 | 1.564 | 1.181 | 0.662 | 1.428 | 1.618 | 0.934 | 1.684 | 1.04 | 0.796 | 0.993 | 0.747 | 0.642 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2406
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-18
|
0.987
|
1.000
|
0.000
|
0.000
|
0.833
|
0.085
|
0.053
|
0.436
|
0.132
|
0.054
|
0.034
|
0.010
|
0.139
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001062
|
4.000
|
1.000
|
Hsc_gene_14804.t1
|
— | — | — |
KAK0396666.1 hypothetical protein QR680_001806 [Steinernema hermaphroditum]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007588+19-78+|IPR018289+177-213+
|
— |
PF04500+19-78+FLYWCH_zinc_finger_domain|PF10551+177-213+MULE_transposase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
47662.520
|
9.616
|
18.000
|
27.427
|
13.350
|
50.728
|
49.272
|
16.990
|
10.437
|
45.146
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
10.509
|
0.298
|
1.218
|
0.369
|
0.333
|
0.000
|
0.000
|
0.559
|
0.691
|
44.416
|
25.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — |
-6.387
|
— | — |