Hg_chrom2_TN10mRNA_2521
Organism: Heterodera glycines Gene Locus: chr2:1057858-1060097 Feature type: polypeptideProtein Sequence
Length: 479
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.874 | 0.922 | 0.835 | 0.936 | 0.661 | 1.071 | 0.721 | 2.296 | 1.16 | 1.354 | 0.569 | 1.105 | 2.088 | 0.763 | 1.619 | 0.865 | 0.787 | 0.854 | 1.285 | 1.167 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2407
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
21-63
|
0.981
|
50-110
|
0.997
|
— | — |
0.002
|
— | — |
0.183
|
0.246
|
0.009
|
0.287
|
0.324
|
0.088
|
0.260
|
0.087
|
0.231
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003189
|
2.000
|
1.000
|
Hsc_gene_25403.t1
|
— | — |
O60503.4 Adenylate cyclase type 9 [Homo sapiens]
|
KAH7731756.1 adenylate cyclase type 9-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009190|GO:0035556
|
GO:0008150_0.848|GO:0005575_0.798|GO:0110165_0.798|GO:0003674_0.760|GO:0009987_0.727|GO:0016020_0.676|GO:0050896_0.661|GO:0003824_0.636|GO:0065007_0.636|GO:0005622_0.619|GO:0050789_0.615|GO:0071944_0.576|GO:0050794_0.575|GO:0008152_0.573|GO:0051716_0.547|GO:0005886_0.546|GO:0044237_0.541|GO:0044238_0.534|GO:0009058_0.528|GO:0016829_0.511|GO:0004016_0.503|GO:0009975_0.503|GO:0016849_0.503
|
IPR001054+243-444_270-463_278-418_278-462+|IPR029787+235-468_272-462+
|
SM00044+243-444+
|
PF00211+270-463+Adenylate_and_Guanylate_cyclase_catalytic_domain
|
G3DSA:3.30.70.1230:FF:000008+265-465+Adenylate_cyclase_type_9
|
PTHR45627+210-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
478-479
|
1.000
|
1-477
|
7pdh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
55249.510
|
9.265
|
26.000
|
24.843
|
17.745
|
43.841
|
56.159
|
16.284
|
8.559
|
45.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
42.037
|
20.078
|
11.968
|
9.174
|
3.591
|
7.254
|
9.922
|
22.875
|
3.822
|
149.221
|
86.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.977
|
-1.266
|
— |
-1.378
|
— | — |
1.564
|
-1.070
|
— | — | — | — | — |
No JSON data available for plots.