Hg_chrom2_TN10mRNA_2522
Organism: Heterodera glycines Gene Locus: chr2:1062619-1064005 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.279 | 1.114 | 1.198 | 3.304 | 1.098 | 1.075 | 0.642 | 1.497 | 0.931 | 0.566 | 2.631 | 1.409 | 1.331 | 0.345 | 1.1 | 0.684 | 0.982 | 0.454 | 0.921 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2408
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
NKKRVKRMKSKR,RKLLTKCPKCKKCRKF,KKVISNLTNNWFGTKENKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.406
|
0.156
|
0.014
|
0.526
|
0.277
|
0.071
|
0.174
|
0.033
|
0.116
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001775
|
3.000
|
1.000
|
Hsc_gene_1472.t1
|
— | — | — |
KAH0800733.1 IBR domain containing protein [Histomonas meleagridis]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0008152_0.822|GO:0043170_0.822|GO:0044238_0.784|GO:0019538_0.747|GO:0003674_0.728|GO:0005575_0.713|GO:0110165_0.713|GO:0005622_0.661|GO:0065007_0.654|GO:0050789_0.652|GO:0009987_0.637|GO:0050794_0.637|GO:0003824_0.558|GO:0140096_0.558|GO:0048518_0.554|GO:0016740_0.549|GO:0009056_0.542|GO:0016746_0.542|GO:0016755_0.542|GO:0019787_0.540|GO:0004842_0.539|GO:0061630_0.536|GO:0061659_0.536|GO:0048522_0.535|GO:0005737_0.516
|
IPR044066+1-96+|IPR051628+2-118+
|
— | — | — |
PTHR22770+2-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
167-167
|
1.000
|
1-166
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
19576.690
|
9.269
|
18.500
|
38.922
|
11.377
|
58.683
|
41.317
|
25.749
|
13.174
|
44.311
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
4.429
|
0.234
|
1.400
|
7.507
|
1.197
|
0.000
|
8.402
|
0.547
|
0.000
|
12.144
|
6.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.890
|
2.541
|
-2.655
|
— |
6.934
|
— |
4.076
|
— | — | — | — | — |
No JSON data available for plots.