Hg_chrom2_TN10mRNA_2523
Organism: Heterodera glycines Gene Locus: chr2:1064754-1066104 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.361 | 0.798 | 2.691 | 1.301 | 1.501 | 0.523 | 0.976 | 1.734 | 1.252 | 1.478 | 2.009 | 1.762 | 0.469 | 0.498 | 0.697 | 0.56 | 0.443 | 1.126 | 0.43 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2409
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.764
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — |
0.577
|
0.040
|
0.000
|
— |
0.462
|
0.193
|
0.013
|
0.564
|
0.189
|
0.113
|
0.081
|
0.016
|
0.043
|
0.350
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001775
|
3.000
|
1.000
|
Hsc_gene_1472.t1
|
Hsc_gene_1472.t1;Hsc_gene_24906.t1
|
— | — |
KAI1719832.1 IBR domain, a half RING-finger domain-containing protein [Ditylenchus destructor]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.949|GO:0005575_0.907|GO:0110165_0.907|GO:0065007_0.895|GO:0009987_0.894|GO:0050789_0.893|GO:0050794_0.872|GO:0050896_0.860|GO:0003674_0.859|GO:0051716_0.835|GO:0007154_0.817|GO:0023052_0.812|GO:0005622_0.811|GO:0007165_0.796|GO:0048518_0.794|GO:0048522_0.783|GO:0008152_0.768|GO:0043170_0.767|GO:0019538_0.766|GO:0044238_0.766|GO:0005737_0.760|GO:0010646_0.757|GO:0023051_0.750|GO:0048583_0.748|GO:0007166_0.738|GO:0009966_0.737|GO:0036211_0.723|GO:0043412_0.723|GO:0010647_0.720|GO:0023056_0.718|GO:0035556_0.718|GO:0003824_0.717|GO:1902531_0.717|GO:0048584_0.712|GO:0141124_0.709|GO:0140096_0.708|GO:0009967_0.707|GO:1902533_0.692|GO:0043687_0.690|GO:0070647_0.690|GO:0032446_0.689|GO:0016567_0.688|GO:0016740_0.687|GO:0000209_0.680|GO:0016746_0.676|GO:0016755_0.676|GO:0019787_0.676|GO:0007249_0.675|GO:0043122_0.674|GO:0004842_0.673|GO:0043123_0.670|GO:0061659_0.666|GO:0061630_0.665|GO:0032991_0.642|GO:0005829_0.604|GO:1902494_0.570|GO:0140535_0.558|GO:1990234_0.556|GO:0000151_0.549|GO:0071797_0.540|GO:0016020_0.512|GO:0005488_0.492|GO:0005515_0.492|GO:0071944_0.479|GO:0005886_0.468|GO:0048519_0.441|GO:0006950_0.423|GO:0048523_0.417|GO:0051179_0.417|GO:0019222_0.416|GO:0042221_0.413|GO:0044237_0.413|GO:0031323_0.410|GO:0009058_0.408|GO:0051234_0.406|GO:0009059_0.404|GO:0044249_0.404|GO:0060255_0.402|GO:0010467_0.398|GO:0080090_0.398|GO:0009893_0.393|GO:0032879_0.392|GO:0002376_0.390|GO:0051641_0.390|GO:0009889_0.387|GO:0031326_0.387|GO:0031325_0.386|GO:0006139_0.383|GO:0010468_0.383|GO:0010556_0.383|GO:0009605_0.382|GO:0008219_0.381|GO:0012501_0.381|GO:0044419_0.380|GO:0065009_0.379|GO:0019899_0.378|GO:0043067_0.377|GO:0006952_0.375|GO:0009607_0.374|GO:0043207_0.374|GO:0090304_0.374|GO:0034654_0.373|GO:0051707_0.372|GO:0033036_0.370|GO:0043069_0.369|GO:0009056_0.368|GO:0141187_0.368|GO:0008104_0.367|GO:0016070_0.367|GO:0032774_0.367|GO:0070727_0.367|GO:0098542_0.365|GO:0019219_0.364|GO:0002682_0.363|GO:0080134_0.363|GO:0006351_0.361|GO:0006955_0.361|GO:0034097_0.361|GO:1901652_0.361|GO:0051252_0.360|GO:2001141_0.360|GO:0006355_0.359|GO:0071345_0.359|GO:0002684_0.358|GO:0045184_0.358|GO:0060341_0.358|GO:0009894_0.355|GO:0009617_0.354|GO:0031347_0.354|GO:0032101_0.354|GO:0032880_0.354|GO:0032103_0.352|GO:0042802_0.352|GO:0044093_0.352|GO:0044248_0.351|GO:0050776_0.351|GO:0050778_0.351
|
IPR002867+136-190+|IPR044066+29-205+|IPR051628+57-198+
|
— |
PF01485+136-190+IBR_domain,_a_half_RING-finger_domain
|
— |
PTHR22770+57-198+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
23506.460
|
7.076
|
2.000
|
26.341
|
11.220
|
46.341
|
53.659
|
14.146
|
12.195
|
42.439
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1.770
|
0.763
|
0.712
|
15.433
|
0.565
|
0.735
|
2.025
|
0.419
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.199
|
4.525
|
-4.776
|
— | — | — | — | — |
4.805
|
— | — | — |