Hg_chrom2_TN10mRNA_2531
Organism: Heterodera glycines Gene Locus: chr2:1163920-1167003 Feature type: polypeptideProtein Sequence
Length: 404
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.461 | 1.842 | 0.72 | 2.902 | 1.65 | 1.396 | 0.501 | 1.856 | 1.265 | 0.97 | 1.95 | 0.582 | 1.375 | 0.571 | 0.404 | 1.061 | 0.649 | 0.3 | 0.571 | 0.51 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2417
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKRLLLPISSSKKQKE
|
— | — | — | — |
1-19
|
0.975
|
0.996
|
0.000
|
0.000
|
0.406
|
0.210
|
0.024
|
0.662
|
0.089
|
0.189
|
0.208
|
0.005
|
0.348
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000192
|
11.000
|
0.000
|
0.000
|
— | — | — |
XP_059156030.1 E3 ubiquitin-protein ligase lubel-like isoform X2 [Physella acuta]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.925|GO:0110165_0.921|GO:0005622_0.845|GO:0005737_0.718|GO:0005829_0.590
|
IPR044066+125-370+|IPR051628+87-385+
|
— | — | — |
PTHR22770+87-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87
|
1.000
|
88-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
46321.730
|
7.663
|
11.500
|
32.426
|
11.139
|
57.178
|
42.822
|
18.564
|
13.861
|
44.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
70.965
|
0.157
|
22.029
|
113.887
|
14.128
|
2.221
|
0.814
|
3.066
|
249.987
|
64.369
|
143.920
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.935
|
9.402
|
2.475
|
-3.049
|
-2.651
|
— | — | — | — | — | — | — | — |