Hg_chrom2_TN10mRNA_2532
Organism: Heterodera glycines Gene Locus: chr2:1170730-1175521 Feature type: polypeptideProtein Sequence
Length: 840
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.204 | 1.301 | 0.563 | 1.929 | 1.627 | 1.374 | 0.992 | 1.548 | 0.794 | 0.837 | 1.443 | 1.331 | 0.893 | 0.572 | 0.729 | 0.697 | 0.761 | 0.938 | 0.366 | 0.385 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2418
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
nucleus
|
KKEEKEELEEKKAKV,KKNREKVKGNEKDKKE,RKAKEKEEAEKKEKEEKK,KKEKEEKKEEKKNREKVK,KKNNGTMPNETKMNARQKK,KKKEEEEIKKKFEEIKKRE,KKEEEEIKKKFEEIKKREE,KKKFEEIKKREEEELKKRK,KKFEEIKKREEEELKKRKA,KKREEEELKKRKAEKERKA,KREEEELKKRKAEKERKAK,KKEEKKNREKVKGNEKDKK,KKEEEKKEGEKGEGVKKEEK
|
— | — | — | — |
1-32
|
0.893
|
1.000
|
1.000
|
1.000
|
0.053
|
0.063
|
0.012
|
0.102
|
0.154
|
0.160
|
0.131
|
0.024
|
0.858
|
0.418
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000772
|
2.000
|
4.000
|
Hsc_gene_13341.t1;Hsc_gene_13342.t1;Hsc_gene_13344.t1;Hsc_gene_13344.t2
|
Hsc_gene_13342.t1
|
— | — | — |
MBQ6322755
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
205-256;361-509
|
3.000
|
1-204;257-360;510-840
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
91638.190
|
7.470
|
15.000
|
29.048
|
8.095
|
49.524
|
50.476
|
16.190
|
12.857
|
51.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
891.214
|
1.970
|
18.651
|
13.378
|
44.499
|
2405.095
|
6061.482
|
71.733
|
16.659
|
655.263
|
381.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.008
|
2.619
|
— |
1.703
|
5.767
|
1.346
|
-5.188
|
6.550
|
-5.408
|
— | — | — | — |