Hg_chrom2_TN10mRNA_2538
Organism: Heterodera glycines Gene Locus: chr2:1224795-1225345 Feature type: polypeptideProtein Sequence
Length: 97
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.48 | 0.24 | 0.75 | 2.844 | 1.203 | 0.529 | 0.859 | 1.031 | 1.145 | 1.115 | 2.187 | 1.213 | 1.718 | 0.991 | 0.631 | 1.178 | 0.338 | 0.781 | 1.586 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2423
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.263
|
0.147
|
0.030
|
0.855
|
0.042
|
0.079
|
0.096
|
0.002
|
0.204
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003193
|
2.000
|
1.000
|
Hsc_gene_13334.t1
|
Hsc_gene_13334.t1
|
— |
P53777.1 Muscle LIM protein 1 [Drosophila melanogaster]
|
KAF7636849.1 LIM zinc-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.916|GO:0005622_0.852|GO:0043226_0.820|GO:0043229_0.799|GO:0008150_0.753|GO:0005737_0.677|GO:0016020_0.666|GO:0043227_0.649|GO:0043231_0.640|GO:0009987_0.611|GO:0003674_0.585|GO:0032502_0.503|GO:0043228_0.502|GO:0043232_0.502
|
IPR001781+13-79+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-97
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
10993.990
|
8.696
|
7.000
|
30.928
|
12.371
|
44.330
|
55.670
|
19.588
|
11.340
|
45.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
54.938
|
4.969
|
209.534
|
26.509
|
3.364
|
58.030
|
2.032
|
331.299
|
0.000
|
1.952
|
1.115
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.169
|
2.278
|
-2.875
|
-3.026
|
4.139
|
-4.826
|
2.408
|
-7.207
|
— |
5.585
|
— | — | — |
No JSON data available for plots.