Hg_chrom2_TN10mRNA_2543
Organism: Heterodera glycines Gene Locus: chr2:1242702-1244735 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.56 | 0.465 | 0.661 | 0.266 | 0.901 | 0.761 | 0.799 | 2.13 | 1.511 | 0.484 | 0.94 | 3.461 | 0.614 | 0.587 | 0.958 | 1.152 | 1.162 | 1.229 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.882
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.126
|
0.054
|
0.036
|
0.183
|
0.477
|
0.230
|
0.250
|
0.024
|
0.629
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000193
|
8.000
|
3.000
|
Hsc_gene_13339.t3;Hsc_gene_13351.t1;Hsc_gene_24426.t1
|
— | — | — |
KAI1694286.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+63-291+|IPR019424+179-290+
|
SM01381+63-291+
|
PF10320+179-290+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
35448.600
|
8.910
|
8.500
|
11.821
|
18.850
|
35.783
|
64.217
|
7.668
|
4.153
|
47.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
106.900
|
5.118
|
15.735
|
8.585
|
3.316
|
1.373
|
3.041
|
2.215
|
5.766
|
448.595
|
258.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.392
|
— |
-0.767
|
-1.406
|
— | — | — | — |
-6.444
|
— |
-6.565
|
— | — |
No JSON data available for plots.