Hg_chrom2_TN10mRNA_2546
Organism: Heterodera glycines Gene Locus: chr2:1257262-1258531 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 1.448 | 0.629 | 1.432 | 0.173 | 0.976 | 0.247 | 0.346 | 2.384 | 1.777 | 0.524 | 2.035 | 1.73 | 0.532 | 0.847 | 1.087 | 0.851 | 1.52 | 1.597 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2431
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKNQMNSQTADQSVRKMLR
|
— | — | — | — | — | — |
0.003
|
— | — |
0.091
|
0.063
|
0.023
|
0.082
|
0.397
|
0.144
|
0.127
|
0.053
|
0.837
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000508
|
5.000
|
2.000
|
Hsc_gene_25838.t1;Hsc_gene_6109.t1
|
Hsc_gene_6109.t1
|
— | — |
KAF7640044.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR017452+58-289+|IPR019424+54-275+
|
— |
PF10320+54-275+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
32911.440
|
8.732
|
10.000
|
12.803
|
12.457
|
35.640
|
64.360
|
8.304
|
4.498
|
47.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
678.676
|
0.621
|
3.521
|
0.887
|
0.178
|
1.015
|
1.827
|
0.268
|
0.000
|
2966.090
|
1694.909
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.266
|
— |
-1.874
|
— | — | — | — | — |
-12.330
|
— |
-13.447
|
— | — |
No JSON data available for plots.