Hg_chrom2_TN10mRNA_2549
Organism: Heterodera glycines Gene Locus: chr2:1262640-1263362 Feature type: polypeptideProtein Sequence
Length: 96
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.242 | 0.242 | 1.136 | 2.874 | 0.868 | 1.068 | 0.62 | 1.042 | 1.389 | 1.267 | 2.052 | 0.613 | 1.157 | 1.202 | 1.063 | 1.042 | 0.683 | 0.789 | 0.801 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2434
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.333
|
0.214
|
0.037
|
0.822
|
0.043
|
0.140
|
0.093
|
0.004
|
0.162
|
0.263
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003194
|
2.000
|
1.000
|
Hsc_gene_13333.t1
|
Hsc_gene_13333.t1
|
— | — |
KAF7636849.1 LIM zinc-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.843|GO:0110165_0.843|GO:0008150_0.808|GO:0005622_0.751|GO:0043226_0.667|GO:0005737_0.657|GO:0009987_0.651|GO:0043229_0.609|GO:0016020_0.584|GO:0032502_0.532|GO:0048856_0.529|GO:0003674_0.504
|
IPR001781+13-79_15-59+
|
— |
PF00412+15-59+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-96
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
10976.950
|
8.909
|
8.000
|
32.292
|
9.375
|
48.958
|
51.042
|
20.833
|
11.458
|
45.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
537.155
|
16.835
|
825.106
|
143.967
|
36.445
|
190.353
|
11.776
|
4235.030
|
221.737
|
136.432
|
172.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.391
|
2.962
|
-2.410
|
-2.019
|
2.401
|
-4.002
|
4.377
|
-8.347
|
— | — | — | — | — |
No JSON data available for plots.