Hg_chrom2_TN10mRNA_2550
Organism: Heterodera glycines Gene Locus: chr2:1263559-1264091 Feature type: polypeptideProtein Sequence
Length: 97
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.48 | 0.24 | 0.75 | 2.844 | 1.203 | 0.529 | 0.982 | 1.031 | 1.145 | 1.115 | 2.187 | 1.213 | 1.718 | 0.793 | 0.631 | 1.178 | 0.507 | 0.625 | 1.586 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2435
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.268
|
0.151
|
0.034
|
0.860
|
0.046
|
0.068
|
0.114
|
0.001
|
0.210
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003193
|
2.000
|
1.000
|
Hsc_gene_13334.t1
|
Hsc_gene_13334.t1
|
— |
P53777.1 Muscle LIM protein 1 [Drosophila melanogaster]
|
KAF7636849.1 LIM zinc-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.914|GO:0005622_0.845|GO:0043226_0.816|GO:0043229_0.796|GO:0008150_0.753|GO:0005737_0.669|GO:0016020_0.664|GO:0043227_0.643|GO:0043231_0.637|GO:0009987_0.614|GO:0003674_0.588|GO:0032502_0.502|GO:0043228_0.502|GO:0043232_0.502|GO:0048856_0.501
|
IPR001781+13-79+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-97
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
10955.900
|
8.696
|
7.000
|
30.928
|
12.371
|
45.361
|
54.639
|
19.588
|
11.340
|
45.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
35.523
|
2.705
|
117.050
|
16.567
|
3.950
|
32.092
|
3.240
|
191.472
|
4.466
|
14.408
|
10.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.218
|
2.485
|
-2.715
|
-2.097
|
3.034
|
-3.296
|
2.474
|
-5.742
|
— | — | — | — | — |
No JSON data available for plots.