Hg_chrom2_TN10mRNA_2557
Organism: Heterodera glycines Gene Locus: chr2:1292717-1294971 Feature type: polypeptideProtein Sequence
Length: 351
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 1.524 | 1.088 | 3.34 | 1.377 | 1.315 | 0.577 | 1.14 | 1.266 | 0.809 | 1.597 | 1.173 | 1.425 | 0.603 | 0.756 | 0.936 | 0.56 | 0.518 | 0.657 | 0.587 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2442
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-Not_Clustered
|
0.624
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-21
|
0.993
|
1.000
|
0.000
|
0.000
|
0.345
|
0.268
|
0.008
|
0.625
|
0.240
|
0.145
|
0.171
|
0.001
|
0.120
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001775
|
3.000
|
1.000
|
Hsc_gene_1472.t1
|
— | — | — |
KAI1719832.1 IBR domain, a half RING-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.903|GO:0008152_0.769|GO:0043170_0.769|GO:0005575_0.764|GO:0110165_0.764|GO:0044238_0.734|GO:0019538_0.710|GO:0003674_0.696|GO:0065007_0.691|GO:0005622_0.685|GO:0050789_0.685|GO:0009987_0.674|GO:0050794_0.674|GO:0016020_0.576|GO:0005737_0.556|GO:0050896_0.535|GO:0048518_0.533|GO:0043226_0.527|GO:0048522_0.511|GO:0009056_0.509|GO:0043229_0.502
|
IPR002867+165-219+|IPR044066+51-296+|IPR051628+39-314+
|
— |
PF01485+165-219+IBR_domain,_a_half_RING-finger_domain
|
— |
PTHR22770+39-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
40046.780
|
7.107
|
4.000
|
30.769
|
10.256
|
52.422
|
47.578
|
16.524
|
14.245
|
48.433
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
25.733
|
0.077
|
0.222
|
45.520
|
0.934
|
0.758
|
3.539
|
0.000
|
89.129
|
26.591
|
53.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.976
|
7.809
|
-5.674
|
— | — | — |
5.674
|
— | — | — | — | — |