Hg_chrom2_TN10mRNA_2560
Organism: Heterodera glycines Gene Locus: chr2:1305685-1307561 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.008 | 0.45 | 0.961 | 0.206 | 1.032 | 0.737 | 0.619 | 2.752 | 1.339 | 0.61 | 1.275 | 2.494 | 0.893 | 0.948 | 0.708 | 1.218 | 0.938 | 0.953 | 1.366 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2445
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
44-64
|
0.957
|
— | — | — | — |
0.000
|
— | — |
0.091
|
0.063
|
0.045
|
0.071
|
0.386
|
0.139
|
0.179
|
0.012
|
0.878
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006601
|
1.000
|
1.000
|
Hsc_gene_1477.t1
|
Hsc_gene_1477.t1
|
— | — |
KAI1698440.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+33-293+|IPR019424+34-293+|IPR047130+26-293+
|
SM01381+33-293+
|
PF10320+34-293+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+26-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
316-323
|
1.000
|
1-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
36623.540
|
9.819
|
18.000
|
13.622
|
16.099
|
34.365
|
65.635
|
9.907
|
3.715
|
45.511
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
478.749
|
3.798
|
57.023
|
19.679
|
4.630
|
6.269
|
6.970
|
25.476
|
4.112
|
2045.001
|
1170.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.667
|
2.231
|
-1.421
|
-2.121
|
— | — |
1.924
|
-1.746
|
— | — | — | — | — |
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