Hg_chrom2_TN10mRNA_2565
Organism: Heterodera glycines Gene Locus: chr2:1334035-1339527 Feature type: polypeptideProtein Sequence
Length: 722
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.675 | 0.932 | 0.764 | 0.923 | 1.172 | 0.824 | 1.177 | 1.508 | 1.179 | 1.196 | 1.304 | 2.001 | 0.932 | 0.65 | 0.732 | 0.886 | 0.776 | 0.639 | 1.018 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2450
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
RKPPKK,KKNILFAGSVGIKLRYYKK
|
— | — |
17-50
|
0.994
|
1-20
|
0.973
|
1.000
|
0.000
|
0.000
|
0.264
|
0.331
|
0.045
|
0.285
|
0.186
|
0.164
|
0.217
|
0.094
|
0.412
|
0.766
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003198
|
1.000
|
2.000
|
Hsc_gene_24924.t1;Hsc_gene_24924.t2
|
Hsc_gene_1480.t1;Hsc_gene_1480.t2;Hsc_gene_1480.t3;Hsc_gene_24924.t1;Hsc_gene_24924.t2
|
— |
P50452.2 Serpin B8 [Homo sapiens]
|
KAI3412091.1 SERPIN [Globodera pallida]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.802|GO:0110165_0.802|GO:0008150_0.754|GO:0005622_0.641|GO:0016020_0.617|GO:0005737_0.592|GO:0071944_0.558|GO:0003674_0.556|GO:0043226_0.532|GO:0009987_0.514
|
IPR000215+371-711+|IPR023796+371-544_374-714_549-711+|IPR036186+365-711+|IPR042178+367-548_615-669+|IPR042185+551-709+
|
SM00093+374-714+
|
PF00079+371-544_549-711+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+371-711+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-722
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
81890.850
|
7.840
|
11.500
|
24.100
|
13.850
|
46.399
|
53.601
|
13.435
|
10.665
|
47.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
18.567
|
2.144
|
6.520
|
3.380
|
7.557
|
114.059
|
12.679
|
64.038
|
0.514
|
1.952
|
1.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.131
|
3.925
|
-3.160
|
-0.940
|
-2.195
|
— | — | — | — | — |