Hg_chrom2_TN10mRNA_2571
Organism: Heterodera glycines Gene Locus: chr2:1388260-1390127 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.163 | 0.398 | 0.539 | 0.26 | 0.641 | 0.818 | 0.938 | 2.778 | 1.562 | 0.473 | 0.735 | 2.865 | 0.661 | 0.574 | 1.071 | 1.383 | 0.852 | 0.481 | 1.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2456
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
41-68
|
0.858
|
— | — | — | — |
0.000
|
— | — |
0.130
|
0.080
|
0.022
|
0.094
|
0.366
|
0.147
|
0.218
|
0.015
|
0.823
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000193
|
8.000
|
3.000
|
Hsc_gene_13339.t3;Hsc_gene_13351.t1;Hsc_gene_24426.t1
|
— | — | — |
KAF7632700.1 7TM_GPCR_Srx domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+33-293+|IPR019424+34-293+|IPR047130+22-293+
|
SM01381+33-293+
|
PF10320+34-293+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+22-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
35496.810
|
9.230
|
10.000
|
11.562
|
16.875
|
35.000
|
65.000
|
7.812
|
3.750
|
47.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
pink
|
26.860
|
0.544
|
5.164
|
2.573
|
0.720
|
0.618
|
0.613
|
0.279
|
0.000
|
113.573
|
64.899
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.016
|
— | — | — | — | — | — | — |
-7.649
|
— |
-7.203
|
— | — |
No JSON data available for plots.