Hg_chrom2_TN10mRNA_2573
Organism: Heterodera glycines Gene Locus: chr2:1403107-1409376 Feature type: polypeptideProtein Sequence
Length: 523
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 1.378 | 1.286 | 0.264 | 0.924 | 1.667 | 0.501 | 1.052 | 1.147 | 0.904 | 1.391 | 1.012 | 1.275 | 1.177 | 0.819 | 1.448 | 1.128 | 0.695 | 0.588 | 0.844 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2458
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — |
0.942
|
0.440
|
0.000
|
— |
0.425
|
0.173
|
0.014
|
0.515
|
0.185
|
0.143
|
0.102
|
0.016
|
0.171
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001782
|
2.000
|
2.000
|
Hsc_gene_24912.t1;Hsc_gene_24912.t2
|
Hsc_gene_24912.t1
|
— | — |
KAI3418172.1 hypothetical protein GPALN_010388 [Globodera pallida]
|
KAH3757638
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003323+194-360_201-324+|IPR038765+197-358+|IPR050704+126-376+
|
— |
PF02338+201-324+OTU-like_cysteine_protease
|
— |
PTHR12419+126-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-194;458-523
|
1.000
|
195-457
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
59105.170
|
8.399
|
8.500
|
27.916
|
10.325
|
57.361
|
42.639
|
15.296
|
12.620
|
50.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
304.604
|
53.113
|
58.887
|
175.355
|
111.593
|
25.230
|
15.950
|
97.612
|
279.728
|
921.196
|
646.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.586
|
1.687
|
-0.683
|
-2.131
|
— |
1.850
|
-2.472
|
— | — |
-2.852
|
— | — |