Hg_chrom2_TN10mRNA_2578
Organism: Heterodera glycines Gene Locus: chr2:1429065-1435163 Feature type: polypeptideProtein Sequence
Length: 425
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.176 | 0.711 | 0.941 | 0.325 | 1.255 | 1.931 | 0.644 | 1.529 | 0.993 | 1.431 | 0.891 | 0.969 | 0.719 | 0.407 | 1.681 | 0.639 | 1.119 | 0.927 | 1.086 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2461
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKLDESLSKMALEIERRRN
|
5-39
|
0.984
|
— | — | — | — |
0.130
|
— | — |
0.138
|
0.893
|
0.057
|
0.209
|
0.218
|
0.229
|
0.181
|
0.043
|
0.094
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001115
|
2.000
|
3.000
|
Hsc_gene_15139.t1;Hsc_gene_15139.t2;Hsc_gene_24909.t1
|
Hsc_gene_15138.t1;Hsc_gene_24909.t1
|
— |
Q22505.2 MICOS complex subunit MIC60-1 [Caenorhabditis elegans]
|
KAI6240190.1 Mitochondrial inner membrane protein Mitofilin domain containing protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.944|GO:0005575_0.927|GO:0110165_0.920|GO:0016020_0.860|GO:0005622_0.853|GO:0043226_0.811|GO:0043229_0.782|GO:0005737_0.775|GO:0009987_0.774|GO:0043227_0.749|GO:0043231_0.722|GO:0071840_0.646|GO:0016043_0.643|GO:0006996_0.598|GO:0031967_0.562|GO:0005739_0.557|GO:0007005_0.549|GO:0005740_0.547
|
IPR019133+52-415_60-418+
|
— |
PF09731+52-415+Mitochondrial_inner_membrane_protein
|
— |
PTHR15415+60-418+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-171
|
1.000
|
172-425
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
48392.990
|
9.152
|
12.500
|
29.882
|
9.882
|
51.765
|
48.235
|
17.176
|
12.706
|
44.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
917.605
|
517.209
|
673.531
|
714.776
|
1002.881
|
841.510
|
1195.109
|
720.936
|
1020.358
|
1124.523
|
1079.881
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.151
|
0.330
|
0.195
|
0.457
|
-0.238
|
0.517
|
-0.332
|
0.874
|
— | — | — | — | — |
No JSON data available for plots.